Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SPG_1544 Genome accession   CP001015
Coordinates   1485203..1485880 (-) Length   225 a.a.
NCBI ID   ACF56552.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1480203..1490880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1539 - 1480513..1481004 (-) 492 ACF56848.1 conserved hypothetical protein -
  SPG_1540 - 1481067..1481189 (+) 123 ACF55888.1 hypothetical protein -
  SPG_1541 - 1481863..1482084 (+) 222 ACF55418.1 conserved hypothetical protein -
  SPG_1542 thrS 1482244..1484187 (+) 1944 ACF55306.1 threonyl-tRNA synthetase (thrS) -
  SPG_1543 - 1484236..1485210 (-) 975 ACF54960.1 histidine kinase TCS01 -
  SPG_1544 braR 1485203..1485880 (-) 678 ACF56552.1 response regulator TCS01 Regulator
  SPG_1545 - 1486036..1487109 (+) 1074 ACF55686.1 conserved hypothetical protein -
  SPG_1546 - 1487200..1487502 (-) 303 ACF55688.1 conserved hypothetical protein -
  SPG_1547 - 1487570..1488007 (-) 438 ACF55075.1 RRF2 family protein -
  SPG_1548 - 1488083..1488925 (-) 843 ACF56801.1 conserved hypothetical protein -
  SPG_1549 dtxR 1489037..1489687 (+) 651 ACF55247.1 iron-dependent transcriptional regulator -
  SPG_1550 - 1489668..1489838 (+) 171 ACF55920.1 conserved hypothetical protein -
  SPG_1551 - 1489864..1490541 (+) 678 ACF55554.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25950.13 Da        Isoelectric Point: 5.1362

>NTDB_id=20378 SPG_1544 ACF56552.1 1485203..1485880(-) (braR) [Streptococcus pneumoniae G54]
MHKILLIEDDQVIRQQVGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNGYHWCQEIRKISKVPIMFLSS
RDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQIL
RVLFEHAGNIVARDDLMRELWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=20378 SPG_1544 ACF56552.1 1485203..1485880(-) (braR) [Streptococcus pneumoniae G54]
ATGCACAAGATTTTATTAATAGAAGATGATCAGGTCATTCGTCAACAGGTCGGGAAAATGCTCTCTGAATGGGGATTTGA
AGTGGTCCTGGTAGAAGACTTTATGGAAGTTTTGAGTCTATTTGTTCAGTCGGAACCTCATCTGGTCCTCATGGATATTG
GTTTGCCCTTGTTTAATGGTTATCACTGGTGTCAGGAAATCCGCAAGATTTCCAAGGTACCTATCATGTTTCTTTCTTCG
AGAGACCAGGCTATGGATATTGTCATGGCAATCAATATGGGGGCGGATGACTTTGTGACCAAGCCTTTTGACCAGCAGGT
TCTTTTAGCCAAGGTTCAGGGCTTGTTGCGTCGTTCCTATGAGTTTGGGCGTGATGAGAGTTTGCTGGAATATGCTGGTG
TTATCCTCAATACCAAATCCATGGATTTACATTATCAAGGGCAAGTTTTGAATTTGACCAAGAATGAATTCCAGATTTTA
CGCGTGTTATTTGAGCATGCAGGCAACATCGTAGCACGTGACGACCTGATGCGGGAACTTTGGAACAGTGACTTTTTCAT
TGATGATAATACCCTCTCTGTCAATGTGGCTCGTTTGCGTAAAAAGTTGGAGGAGCAGGGATTGGTAGGATTTATCGAGA
CCAAGAAAGGAATAGGGTACGGATTGAAGCATGCTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.624

96.889

0.471
  vicR Streptococcus mutans UA159

34.894

100

0.364