Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SMA_2192 Genome accession   HE613569
Coordinates   2129056..2129832 (+) Length   258 a.a.
NCBI ID   CCF03483.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2124056..2134832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_2188 insI1 2126024..2126287 (+) 264 CCF03479.1 Transposase -
  SMA_2189 - 2126280..2126573 (+) 294 CCF03480.1 Transposase -
  SMA_2190 rlmH 2127031..2127510 (-) 480 CCF03481.1 LSU m3Psi methyltransferase RlmH -
  SMA_2191 htrA 2127721..2128986 (+) 1266 CCF03482.1 Serine protease, DegP/HtrA, do-like Regulator
  SMA_2192 spo0J 2129056..2129832 (+) 777 CCF03483.1 Chromosome (plasmid) partitioning protein ParB Regulator

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29706.40 Da        Isoelectric Point: 9.7762

>NTDB_id=20376 SMA_2192 CCF03483.1 2129056..2129832(+) (spo0J) [Streptococcus macedonicus ACA-DC 198]
MPETLTLIKTENISPNPYQPRLEFKQEELEELARSIKTNGLIQPIIVRESTVFGYELIAGERRLRASKMAGLTEIPAIIK
NISNQESMQLAIVENLQRSDLNPIEEAKAYQQLLEKNQMTHEELAQFMGKSRPYITNCLRLLNLPKSLSDSVEKGELSQG
HARVLLTLKNVEDQEKWYQKILTEDISVRKLEHLLKPAKKKKNRPKKKDIFVRNQEEELTKQLGLPVKITISKTGTKGEV
SLHFQSEEDLNRIINKLK

Nucleotide


Download         Length: 777 bp        

>NTDB_id=20376 SMA_2192 CCF03483.1 2129056..2129832(+) (spo0J) [Streptococcus macedonicus ACA-DC 198]
ATGCCTGAAACACTCACATTAATCAAAACTGAAAATATCTCACCTAATCCCTACCAACCCCGTTTAGAATTTAAACAAGA
GGAGCTAGAAGAACTAGCACGTTCGATTAAAACTAATGGGCTTATTCAGCCGATTATCGTCCGAGAATCAACTGTCTTTG
GTTATGAGCTTATTGCTGGTGAAAGACGTCTAAGAGCCTCAAAAATGGCAGGTTTAACCGAAATTCCTGCTATCATAAAA
AATATCTCCAATCAGGAGAGCATGCAGCTGGCTATCGTTGAAAATTTGCAACGTTCTGATTTAAATCCAATCGAAGAAGC
AAAAGCTTACCAGCAGCTTCTGGAAAAAAATCAAATGACCCATGAAGAATTAGCACAATTTATGGGAAAATCTCGCCCCT
ACATTACCAATTGTCTCAGATTACTTAACCTTCCTAAAAGTCTCTCTGATTCCGTTGAAAAAGGTGAGCTGTCTCAAGGA
CACGCGCGTGTTCTTTTAACCCTTAAAAATGTGGAAGATCAAGAGAAGTGGTATCAAAAAATTCTGACAGAGGATATTAG
CGTTAGAAAACTTGAACATTTACTAAAACCTGCTAAAAAGAAAAAAAATCGTCCCAAAAAGAAAGATATTTTCGTTCGAA
ATCAAGAAGAAGAATTGACCAAACAGTTAGGACTTCCTGTTAAAATTACCATCTCTAAAACTGGCACAAAAGGAGAGGTG
AGTTTACATTTTCAATCTGAAGAAGACTTAAACAGAATTATCAACAAGCTAAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(150-196)

ParB/Sulfiredoxin domain (ParB_N)

(7-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

59.533

99.612

0.593

Multiple sequence alignment