Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   K04M3_RS13395 Genome accession   NZ_CP017896
Coordinates   2846888..2847502 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus isolate K04M3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2841888..2852502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K04M3_RS13375 (K04M3_26160) - 2842171..2843088 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  K04M3_RS13380 (K04M3_26170) - 2843339..2845009 (-) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  K04M3_RS13385 (K04M3_26180) can 2845291..2845959 (+) 669 WP_005379996.1 carbonate dehydratase -
  K04M3_RS13390 (K04M3_26190) hpt 2846038..2846568 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  K04M3_RS13395 (K04M3_26200) opaR 2846888..2847502 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  K04M3_RS13400 (K04M3_26210) lpdA 2847648..2849075 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  K04M3_RS13405 (K04M3_26220) aceF 2849343..2851241 (-) 1899 WP_005386611.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=203757 K04M3_RS13395 WP_005379994.1 2846888..2847502(+) (opaR) [Vibrio alginolyticus isolate K04M3]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=203757 K04M3_RS13395 WP_005379994.1 2846888..2847502(+) (opaR) [Vibrio alginolyticus isolate K04M3]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGTGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment