Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K04M3_RS06390 Genome accession   NZ_CP017896
Coordinates   1353894..1355315 (-) Length   473 a.a.
NCBI ID   WP_086046658.1    Uniprot ID   -
Organism   Vibrio alginolyticus isolate K04M3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1348894..1360315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K04M3_RS06365 (K04M3_12520) - 1349424..1350074 (+) 651 WP_021707633.1 thiopurine S-methyltransferase -
  K04M3_RS06370 (K04M3_12530) purT 1350147..1351322 (-) 1176 WP_054728706.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  K04M3_RS06375 (K04M3_12540) cdd 1351466..1352353 (-) 888 WP_005377892.1 cytidine deaminase -
  K04M3_RS06380 (K04M3_12550) - 1352785..1353462 (-) 678 WP_005377888.1 LrgB family protein -
  K04M3_RS06385 (K04M3_12560) - 1353464..1353838 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  K04M3_RS06390 (K04M3_12570) sbcB 1353894..1355315 (-) 1422 WP_086046658.1 exodeoxyribonuclease I Machinery gene
  K04M3_RS06395 (K04M3_12580) - 1355496..1356713 (+) 1218 WP_086046659.1 tyrosine-type recombinase/integrase -
  K04M3_RS06400 (K04M3_12590) - 1356836..1357363 (+) 528 WP_086046660.1 hypothetical protein -
  K04M3_RS06405 (K04M3_12600) - 1357366..1357923 (+) 558 WP_086046661.1 hypothetical protein -
  K04M3_RS06410 (K04M3_12610) - 1358071..1358826 (+) 756 WP_086046662.1 hypothetical protein -
  K04M3_RS06415 (K04M3_12620) - 1358900..1359556 (+) 657 WP_086046663.1 TauD/TfdA family dioxygenase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54341.54 Da        Isoelectric Point: 4.7710

>NTDB_id=203752 K04M3_RS06390 WP_086046658.1 1353894..1355315(-) (sbcB) [Vibrio alginolyticus isolate K04M3]
MNNTEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYCYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=203752 K04M3_RS06390 WP_086046658.1 1353894..1355315(-) (sbcB) [Vibrio alginolyticus isolate K04M3]
ATGAATAATACCGAACAGCCTACATTCTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACTGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment