Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | K04M1_RS13505 | Genome accession | NZ_CP017891 |
| Coordinates | 2843841..2844455 (+) | Length | 204 a.a. |
| NCBI ID | WP_005379994.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain K04M1 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2838841..2849455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K04M1_RS13485 (K04M1_26150) | - | 2839124..2840041 (-) | 918 | WP_005380000.1 | ABC transporter ATP-binding protein | - |
| K04M1_RS13490 (K04M1_26160) | - | 2840292..2841962 (-) | 1671 | WP_005379997.1 | SulP family inorganic anion transporter | - |
| K04M1_RS13495 (K04M1_26170) | can | 2842244..2842912 (+) | 669 | WP_005379996.1 | carbonate dehydratase | - |
| K04M1_RS13500 (K04M1_26180) | hpt | 2842991..2843521 (-) | 531 | WP_005379995.1 | hypoxanthine phosphoribosyltransferase | - |
| K04M1_RS13505 (K04M1_26190) | opaR | 2843841..2844455 (+) | 615 | WP_005379994.1 | transcriptional regulator OpaR | Regulator |
| K04M1_RS13510 (K04M1_26200) | lpdA | 2844601..2846028 (-) | 1428 | WP_005379993.1 | dihydrolipoyl dehydrogenase | - |
| K04M1_RS13515 (K04M1_26210) | aceF | 2846296..2848194 (-) | 1899 | WP_005386611.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23609.89 Da Isoelectric Point: 6.4042
>NTDB_id=203708 K04M1_RS13505 WP_005379994.1 2843841..2844455(+) (opaR) [Vibrio alginolyticus strain K04M1]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH
Nucleotide
Download Length: 615 bp
>NTDB_id=203708 K04M1_RS13505 WP_005379994.1 2843841..2844455(+) (opaR) [Vibrio alginolyticus strain K04M1]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGTGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGTGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
97.059 |
100 |
0.971 |
| hapR | Vibrio cholerae C6706 |
73.232 |
97.059 |
0.711 |
| hapR | Vibrio cholerae strain A1552 |
73.232 |
97.059 |
0.711 |