Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | K01M1_RS14840 | Genome accession | NZ_CP017889 |
| Coordinates | 3103677..3104270 (-) | Length | 197 a.a. |
| NCBI ID | WP_017633532.1 | Uniprot ID | A0A2I3CBG0 |
| Organism | Vibrio alginolyticus strain K01M1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3098677..3109270
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K01M1_RS14820 (K01M1_28670) | aroB | 3099562..3100662 (-) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
| K01M1_RS14825 (K01M1_28680) | aroK | 3100695..3101213 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| K01M1_RS14830 (K01M1_28690) | pilQ | 3101401..3103146 (-) | 1746 | WP_005382765.1 | type IV pilus secretin PilQ | Machinery gene |
| K01M1_RS14835 (K01M1_28700) | pilP | 3103172..3103687 (-) | 516 | WP_086047068.1 | pilus assembly protein PilP | Machinery gene |
| K01M1_RS14840 (K01M1_28710) | pilO | 3103677..3104270 (-) | 594 | WP_017633532.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| K01M1_RS14845 (K01M1_28720) | pilN | 3104263..3104838 (-) | 576 | WP_017821732.1 | PilN domain-containing protein | Machinery gene |
| K01M1_RS14850 (K01M1_28730) | pilM | 3104822..3105838 (-) | 1017 | WP_017821733.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| K01M1_RS14855 (K01M1_28740) | - | 3105983..3108544 (+) | 2562 | WP_025768081.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 22987.48 Da Isoelectric Point: 5.0885
>NTDB_id=203675 K01M1_RS14840 WP_017633532.1 3103677..3104270(-) (pilO) [Vibrio alginolyticus strain K01M1]
MVDWQDLEIDEMAEWPLLPQIVVIALLIMAIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
MVDWQDLEIDEMAEWPLLPQIVVIALLIMAIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=203675 K01M1_RS14840 WP_017633532.1 3103677..3104270(-) (pilO) [Vibrio alginolyticus strain K01M1]
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCACTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTCC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCAATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCACTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTCC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCAATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
87.368 |
96.447 |
0.843 |
| pilO | Vibrio cholerae strain A1552 |
70.681 |
96.954 |
0.685 |