Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BLD33_RS05650 Genome accession   NZ_CP017873
Coordinates   1078247..1079017 (-) Length   256 a.a.
NCBI ID   WP_052779041.1    Uniprot ID   A0A3Z9EYH9
Organism   Campylobacter coli strain WA333     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1073247..1084017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD33_RS05620 (BLD33_05620) aspS 1073383..1075134 (+) 1752 WP_052780201.1 aspartate--tRNA ligase -
  BLD33_RS05625 (BLD33_05625) - 1075131..1075706 (+) 576 WP_002781658.1 adenylate kinase -
  BLD33_RS05630 (BLD33_05630) ppa 1075716..1076234 (+) 519 WP_002776378.1 inorganic diphosphatase -
  BLD33_RS05635 (BLD33_05635) msrA 1076282..1076782 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BLD33_RS05640 (BLD33_05640) - 1077005..1077859 (-) 855 WP_370450124.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  BLD33_RS05645 (BLD33_05645) ruvX 1077870..1078250 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  BLD33_RS05650 (BLD33_05650) dprA 1078247..1079017 (-) 771 WP_052779041.1 DNA-processing protein DprA Machinery gene
  BLD33_RS05655 (BLD33_05655) - 1079007..1080059 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  BLD33_RS05660 (BLD33_05660) ilvC 1080062..1081084 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  BLD33_RS05665 (BLD33_05665) - 1081207..1083141 (+) 1935 WP_002776352.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28789.17 Da        Isoelectric Point: 5.0727

>NTDB_id=203451 BLD33_RS05650 WP_052779041.1 1078247..1079017(-) (dprA) [Campylobacter coli strain WA333]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGAIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=203451 BLD33_RS05650 WP_052779041.1 1078247..1079017(-) (dprA) [Campylobacter coli strain WA333]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGCTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9EYH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.917

93.75

0.449

Multiple sequence alignment