Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SMA_0388 Genome accession   HE613569
Coordinates   401342..402067 (+) Length   241 a.a.
NCBI ID   CCF01679.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 396342..407067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0382 yieG 396770..398191 (+) 1422 CCF01673.1 Guanine-hypoxanthine permease -
  SMA_0383 - 398376..398819 (+) 444 CCF01674.1 ATPase YjeE, predicted to have essential role in cell wall biosynthesis -
  SMA_0384 yhhY 398812..399324 (+) 513 CCF01675.1 Acetyltransferase -
  SMA_0385 brpA 399335..400477 (+) 1143 CCF01676.1 Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily F2 -
  SMA_0386 - 400560..400862 (-) 303 CCF01677.1 Hypothetical protein -
  SMA_0387 hit 400859..401278 (-) 420 CCF01678.1 Histidine triad (HIT) nucleotide-binding protein, similarity with At5g48545 and yeast YDL125C (HNT1) -
  SMA_0388 pptA 401342..402067 (+) 726 CCF01679.1 ABC transporter, ATP-binding protein EcsA Regulator
  SMA_0389 ecsB 402069..403103 (+) 1035 CCF01680.1 ABC transporter, permease protein EscB -
  SMA_0390 ytmP 403168..403962 (+) 795 CCF01681.1 Aminoglycoside phosphotransferase family protein -
  SMA_0391 trmB 403962..404600 (+) 639 CCF01682.1 tRNA (guanine-N(7)-)-methyltransferase -
  SMA_0392 - 404932..406003 (+) 1072 Protein_391 Hypothetical protein -
  SMA_0393 - 405963..407030 (+) 1068 Protein_392 Hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26737.08 Da        Isoelectric Point: 4.4206

>NTDB_id=20337 SMA_0388 CCF01679.1 401342..402067(+) (pptA) [Streptococcus macedonicus ACA-DC 198]
MLKIENVTGGYINIPVLKNISFEVGDGELIGLIGLNGAGKSTTINEIIGLLTPYQGQISIDGLTLAQDQAEYRKKIGFIP
EMPSLYEELTLREHLETVAMAYDLNYDEAMARATELLELFRLSDKLEWFPINFSKGMKQKVMIICAFMVNPSLFIVDEPF
LGLDPLAISDLTELLAQEKAKGKAILMSTHVLDAAEKMCDRFVILHQGQIRATGTLAELREAFGDETATLNAIYMSLTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=20337 SMA_0388 CCF01679.1 401342..402067(+) (pptA) [Streptococcus macedonicus ACA-DC 198]
ATGTTAAAAATTGAAAATGTAACTGGGGGATATATTAACATCCCTGTCTTAAAAAATATTTCTTTTGAAGTTGGTGACGG
TGAGCTTATTGGCTTAATTGGTTTGAATGGGGCTGGTAAGTCAACGACAATCAATGAAATTATCGGACTTTTAACGCCAT
ATCAAGGGCAAATTTCGATTGATGGTTTGACTTTGGCGCAGGATCAGGCGGAATATCGTAAGAAAATCGGATTTATCCCA
GAAATGCCAAGTTTATATGAAGAACTGACTTTACGTGAACATTTAGAAACGGTTGCAATGGCTTATGACCTTAATTATGA
TGAGGCGATGGCGCGTGCGACAGAATTGTTGGAACTTTTCCGTTTATCTGATAAATTAGAGTGGTTTCCGATTAATTTCT
CTAAAGGGATGAAGCAGAAGGTCATGATTATTTGTGCCTTTATGGTTAATCCAAGTTTGTTTATCGTTGATGAACCCTTT
TTGGGATTGGACCCATTAGCGATTTCTGATTTGACAGAATTATTGGCGCAAGAAAAGGCAAAAGGAAAAGCGATTTTGAT
GTCAACACACGTTTTGGATGCTGCTGAAAAGATGTGTGACCGTTTTGTGATTTTGCATCAAGGGCAAATTCGTGCGACTG
GTACATTGGCAGAGCTACGTGAAGCTTTTGGTGATGAGACAGCAACGCTTAATGCTATTTATATGTCATTGACTAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

79.498

99.17

0.788
  pptA Streptococcus thermophilus LMD-9

79.079

99.17

0.784

Multiple sequence alignment