Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SMA_0356 Genome accession   HE613569
Coordinates   367734..368780 (+) Length   348 a.a.
NCBI ID   CCF01647.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 362734..373780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0353 oppA 364000..365655 (+) 1656 CCF01644.1 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA -
  SMA_0354 oppB 365766..366680 (+) 915 CCF01645.1 Oligopeptide transport system permease protein OppB -
  SMA_0355 dppC 366691..367722 (+) 1032 CCF01646.1 Oligopeptide transport system permease protein OppC -
  SMA_0356 oppD 367734..368780 (+) 1047 CCF01647.1 Oligopeptide transport ATP-binding protein OppD Regulator
  SMA_0357 amiF 368780..369709 (+) 930 CCF01648.1 Oligopeptide transport ATP-binding protein OppF Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38636.30 Da        Isoelectric Point: 4.9600

>NTDB_id=20334 SMA_0356 CCF01647.1 367734..368780(+) (oppD) [Streptococcus macedonicus ACA-DC 198]
MTEETILQVKNLRVDFHTYAGEIKAIRDVSFDLKKGETLAIVGESGSGKSVTTKTLMGLSASNAEVTGDIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEALKRALELMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDILIADEPTTALDVTIQAQILNLMKQIQKERGSSIVFITHDLGVVAGMADRVAVMYAGKIIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHFAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=20334 SMA_0356 CCF01647.1 367734..368780(+) (oppD) [Streptococcus macedonicus ACA-DC 198]
ATGACTGAAGAAACAATTTTACAAGTTAAAAACCTCCGTGTAGATTTCCATACCTATGCTGGGGAAATTAAAGCTATTCG
TGATGTCAGCTTTGACTTAAAAAAAGGTGAAACGCTTGCCATAGTTGGTGAGTCAGGTTCAGGTAAATCTGTAACAACAA
AAACGTTGATGGGCTTGTCAGCTTCAAATGCAGAAGTTACAGGAGACATCGATTTCAAAGGTAAAAAATTAACAGAATTA
AAAGAAGACGAATGGATTAAGGTTCGTGGAAATGAAATTGCAATGATTTTCCAAGACCCTATGACAAGTCTTGACCCAAC
AATGAAAATTGGTCAACAAATTGCTGAACCAATTATGATTCATGAAAAAGTTTCTAAACAAGAAGCTTTAAAACGTGCTT
TGGAACTCATGAAAAATGTCGGTATTCCAAACGCAGAAGAACATATTAATGATTATCCGCACCAATGGTCAGGTGGTATG
CGTCAACGTGCTGTTATTGCGATTGCCTTGGCAGCAAACCCAGATATTTTGATTGCTGATGAACCTACAACAGCCTTGGA
CGTAACCATTCAAGCACAAATTTTGAATTTGATGAAACAAATTCAAAAAGAACGTGGTTCATCAATCGTCTTTATCACAC
ATGACCTTGGTGTTGTTGCGGGTATGGCTGATCGTGTTGCTGTTATGTATGCTGGTAAGATTATTGAATATGGAACAGTA
GATGAAGTATTCTATAACCCACAACATCCATATACTTGGGGGCTTTTGAATTCAATGCCAACAACTGATACTGAAGCAGG
AAGCCTTCAATCTATCCCAGGGACACCGCCAGATCTCCTTAATCCACCAAAAGGTGATGCTTTTGCACCACGTAACGAGT
TTGCTTTAGATATTGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGATACGCATTTTGCAGCTACATGGTTGTTA
GATGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.692

99.713

0.805
  amiE Streptococcus salivarius strain HSISS4

58.876

97.126

0.572
  amiE Streptococcus thermophilus LMG 18311

58.58

97.126

0.569
  amiE Streptococcus thermophilus LMD-9

58.58

97.126

0.569

Multiple sequence alignment