Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SPG_0473 Genome accession   CP001015
Coordinates   468039..469088 (+) Length   349 a.a.
NCBI ID   ACF56550.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 463039..474088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_0469 dnaJ 465033..466169 (+) 1137 ACF55338.1 chaperone protein DnaJ -
  SPG_0470 - 466536..466823 (-) 288 ACF55002.1 conserved hypothetical protein -
  SPG_0471 - 466833..467243 (-) 411 ACF55464.1 histidine triad domain -
  SPG_0472 pptA 467311..468042 (+) 732 ACF55022.1 ABC transporter, ATP-binding protein Regulator
  SPG_0473 pptB 468039..469088 (+) 1050 ACF56550.1 ABC transporter, permease protein Regulator
  SPG_0474 blpT 469256..469585 (-) 330 ACF55843.1 BlpT protein, fusion -
  SPG_0475 blpS 469862..470200 (+) 339 ACF55842.1 BlpS protein -
  SPG_0476 comE/blpR 470205..470942 (+) 738 ACF55252.1 BlpR response regulator TCS13 Regulator
  SPG_0477 blpH 470956..472296 (+) 1341 ACF56847.1 BlpH histidine kinase TCS13 -
  SPG_0478 blpC 472367..472495 (-) 129 ACF56106.1 bacteriocin BlpC -
  SPG_0479 blpB 472552..473913 (-) 1362 ACF56304.1 BlpC ABC transporter -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=20334 SPG_0473 ACF56550.1 468039..469088(+) (pptB) [Streptococcus pneumoniae G54]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=20334 SPG_0473 ACF56550.1 468039..469088(+) (pptB) [Streptococcus pneumoniae G54]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTATTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-156)

Bacterial ABC transporter protein EcsB (EcsB)

(158-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479
  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47

Multiple sequence alignment