Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   BLD38_RS08150 Genome accession   NZ_CP017862
Coordinates   1541848..1543029 (-) Length   393 a.a.
NCBI ID   WP_002873600.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FJ3124     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536848..1548029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD38_RS08120 (BLD38_08120) - 1537393..1537734 (+) 342 WP_002884788.1 hypothetical protein -
  BLD38_RS08125 (BLD38_08125) flgM 1537797..1537994 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  BLD38_RS08130 (BLD38_08130) - 1538036..1538470 (+) 435 WP_002779263.1 flagellar protein FlgN -
  BLD38_RS08135 (BLD38_08135) flgK 1538480..1540306 (+) 1827 WP_002855300.1 flagellar hook-associated protein FlgK -
  BLD38_RS08140 (BLD38_08140) - 1540323..1541087 (+) 765 WP_071319725.1 TIGR02757 family protein -
  BLD38_RS08145 (BLD38_08145) - 1541091..1541861 (+) 771 WP_002873601.1 TSUP family transporter -
  BLD38_RS08150 (BLD38_08150) ctsF 1541848..1543029 (-) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  BLD38_RS08155 (BLD38_08155) ctsE 1543026..1544585 (-) 1560 WP_032582256.1 GspE/PulE family protein Machinery gene
  BLD38_RS08160 (BLD38_08160) ctsX 1544575..1545162 (-) 588 WP_002880443.1 hypothetical protein Machinery gene
  BLD38_RS08165 (BLD38_08165) ctsP 1545166..1545774 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BLD38_RS08170 (BLD38_08170) mshL 1545767..1547177 (-) 1411 Protein_1580 pilus (MSHA type) biogenesis protein MshL -
  BLD38_RS08175 (BLD38_08175) ctsR 1547155..1547466 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45731.32 Da        Isoelectric Point: 8.8959

>NTDB_id=203324 BLD38_RS08150 WP_002873600.1 1541848..1543029(-) (ctsF) [Campylobacter jejuni strain FJ3124]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=203324 BLD38_RS08150 WP_002873600.1 1541848..1543029(-) (ctsF) [Campylobacter jejuni strain FJ3124]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment