Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   BLD38_RS08175 Genome accession   NZ_CP017862
Coordinates   1547155..1547466 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain FJ3124     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1542155..1552466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD38_RS08155 (BLD38_08155) ctsE 1543026..1544585 (-) 1560 WP_032582256.1 GspE/PulE family protein Machinery gene
  BLD38_RS08160 (BLD38_08160) ctsX 1544575..1545162 (-) 588 WP_002880443.1 hypothetical protein Machinery gene
  BLD38_RS08165 (BLD38_08165) ctsP 1545166..1545774 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BLD38_RS08170 (BLD38_08170) mshL 1545767..1547177 (-) 1411 Protein_1580 pilus (MSHA type) biogenesis protein MshL -
  BLD38_RS08175 (BLD38_08175) ctsR 1547155..1547466 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  BLD38_RS08180 (BLD38_08180) nifJ 1547490..1551050 (-) 3561 WP_071319726.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BLD38_RS08185 (BLD38_08185) - 1551143..1551784 (-) 642 WP_052777740.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=203328 BLD38_RS08175 WP_002855438.1 1547155..1547466(-) (ctsR) [Campylobacter jejuni strain FJ3124]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=203328 BLD38_RS08175 WP_002855438.1 1547155..1547466(-) (ctsR) [Campylobacter jejuni strain FJ3124]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment