Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   BLD41_RS07990 Genome accession   NZ_CP017859
Coordinates   1475387..1476568 (-) Length   393 a.a.
NCBI ID   WP_002873600.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YQ2210     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470387..1481568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD41_RS07960 (BLD41_07960) - 1470931..1471272 (+) 342 WP_002784057.1 hypothetical protein -
  BLD41_RS07965 (BLD41_07965) flgM 1471335..1471532 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  BLD41_RS07970 (BLD41_07970) - 1471575..1472009 (+) 435 WP_002779263.1 flagellar protein FlgN -
  BLD41_RS07975 (BLD41_07975) flgK 1472019..1473845 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  BLD41_RS07980 (BLD41_07980) - 1473862..1474626 (+) 765 WP_002918633.1 TIGR02757 family protein -
  BLD41_RS07985 (BLD41_07985) - 1474630..1475400 (+) 771 WP_004314270.1 TSUP family transporter -
  BLD41_RS07990 (BLD41_07990) ctsF 1475387..1476568 (-) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  BLD41_RS07995 (BLD41_07995) ctsE 1476565..1478124 (-) 1560 WP_079266714.1 GspE/PulE family protein Machinery gene
  BLD41_RS08000 (BLD41_08000) ctsX 1478114..1478701 (-) 588 WP_070317373.1 transformation system protein Machinery gene
  BLD41_RS08005 (BLD41_08005) ctsP 1478705..1479313 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BLD41_RS08010 (BLD41_08010) ctsD 1479306..1480718 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BLD41_RS08015 (BLD41_08015) ctsR 1480696..1481007 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45731.32 Da        Isoelectric Point: 8.8959

>NTDB_id=203269 BLD41_RS07990 WP_002873600.1 1475387..1476568(-) (ctsF) [Campylobacter jejuni strain YQ2210]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=203269 BLD41_RS07990 WP_002873600.1 1475387..1476568(-) (ctsF) [Campylobacter jejuni strain YQ2210]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment