Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   BLD41_RS08015 Genome accession   NZ_CP017859
Coordinates   1480696..1481007 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain YQ2210     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1475696..1486007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD41_RS07995 (BLD41_07995) ctsE 1476565..1478124 (-) 1560 WP_079266714.1 GspE/PulE family protein Machinery gene
  BLD41_RS08000 (BLD41_08000) ctsX 1478114..1478701 (-) 588 WP_070317373.1 transformation system protein Machinery gene
  BLD41_RS08005 (BLD41_08005) ctsP 1478705..1479313 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BLD41_RS08010 (BLD41_08010) ctsD 1479306..1480718 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BLD41_RS08015 (BLD41_08015) ctsR 1480696..1481007 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  BLD41_RS08020 (BLD41_08020) nifJ 1481031..1484591 (-) 3561 WP_070317372.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BLD41_RS08025 (BLD41_08025) - 1484685..1485326 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=203274 BLD41_RS08015 WP_002855438.1 1480696..1481007(-) (ctsR) [Campylobacter jejuni strain YQ2210]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=203274 BLD41_RS08015 WP_002855438.1 1480696..1481007(-) (ctsR) [Campylobacter jejuni strain YQ2210]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment