Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BLD40_RS03520 Genome accession   NZ_CP017856
Coordinates   593509..594282 (+) Length   257 a.a.
NCBI ID   WP_070317309.1    Uniprot ID   A0A5Y6HMQ5
Organism   Campylobacter jejuni strain ZP3204     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 588509..599282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD40_RS03505 (BLD40_03505) - 589358..591292 (-) 1935 WP_071450849.1 ribonuclease R family protein -
  BLD40_RS03510 (BLD40_03510) ilvC 591411..592433 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  BLD40_RS03515 (BLD40_03515) - 592437..593519 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  BLD40_RS03520 (BLD40_03520) dprA 593509..594282 (+) 774 WP_070317309.1 DNA-processing protein DprA Machinery gene
  BLD40_RS03525 (BLD40_03525) ruvX 594279..594662 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  BLD40_RS03530 (BLD40_03530) - 594691..595530 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  BLD40_RS03535 (BLD40_03535) msrA 595706..596164 (-) 459 WP_071450850.1 peptide-methionine (S)-S-oxide reductase MsrA -
  BLD40_RS03540 (BLD40_03540) ppa 596244..596762 (-) 519 WP_002852138.1 inorganic diphosphatase -
  BLD40_RS03545 (BLD40_03545) adk 596772..597350 (-) 579 WP_032590860.1 adenylate kinase -
  BLD40_RS03550 (BLD40_03550) aspS 597347..599098 (-) 1752 WP_052777314.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28872.60 Da        Isoelectric Point: 6.7118

>NTDB_id=203228 BLD40_RS03520 WP_070317309.1 593509..594282(+) (dprA) [Campylobacter jejuni strain ZP3204]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKHALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=203228 BLD40_RS03520 WP_070317309.1 593509..594282(+) (dprA) [Campylobacter jejuni strain ZP3204]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACATGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y6HMQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment