Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   BLD40_RS03330 Genome accession   NZ_CP017856
Coordinates   551613..552263 (-) Length   216 a.a.
NCBI ID   WP_070317288.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZP3204     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 546613..557263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD40_RS03300 (BLD40_03300) - 548006..548753 (+) 748 Protein_588 TlyA family RNA methyltransferase -
  BLD40_RS03305 (BLD40_03305) ribF 548719..549573 (+) 855 WP_002884103.1 bifunctional riboflavin kinase/FAD synthetase -
  BLD40_RS03310 (BLD40_03310) cmoA 549560..550270 (+) 711 WP_079744398.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  BLD40_RS03315 (BLD40_03315) - 550260..550481 (-) 222 WP_002859102.1 EexN family lipoprotein -
  BLD40_RS03320 (BLD40_03320) - 550478..550912 (-) 435 WP_002855128.1 EexN family lipoprotein -
  BLD40_RS03325 (BLD40_03325) - 550970..551602 (-) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  BLD40_RS03330 (BLD40_03330) CJE0566 551613..552263 (-) 651 WP_070317288.1 DNA/RNA non-specific endonuclease Regulator
  BLD40_RS03335 (BLD40_03335) nth 552260..552886 (-) 627 WP_070313938.1 endonuclease III -
  BLD40_RS03340 (BLD40_03340) peb4 552967..553788 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  BLD40_RS03345 (BLD40_03345) fbaA 553788..554852 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  BLD40_RS03350 (BLD40_03350) - 554947..556389 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25516.20 Da        Isoelectric Point: 9.7363

>NTDB_id=203227 BLD40_RS03330 WP_070317288.1 551613..552263(-) (CJE0566) [Campylobacter jejuni strain ZP3204]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKTAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYNKEPQYIKNHIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=203227 BLD40_RS03330 WP_070317288.1 551613..552263(-) (CJE0566) [Campylobacter jejuni strain ZP3204]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GTACAAAAGCTGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAACTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACTCCGCAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTCCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACAATAAAGAACCACAATACATTAAAAACCATATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment