Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   BG256_RS06860 Genome accession   NZ_CP017811
Coordinates   1388505..1389188 (+) Length   227 a.a.
NCBI ID   WP_071163116.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NML-Hia-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383505..1394188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG256_RS06835 (BG256_06835) - 1383728..1384258 (-) 531 WP_071163114.1 DsbE family thiol:disulfide interchange protein -
  BG256_RS06840 (BG256_06840) nrfE 1384258..1386165 (-) 1908 WP_071163115.1 heme lyase NrfEFG subunit NrfE -
  BG256_RS06845 (BG256_06845) suhB 1386274..1387077 (-) 804 WP_048951686.1 inositol-1-monophosphatase -
  BG256_RS06850 (BG256_06850) comN 1387277..1387789 (+) 513 WP_013526183.1 pilus assembly FimT family protein Machinery gene
  BG256_RS06855 (BG256_06855) comO 1387789..1388505 (+) 717 WP_005651546.1 PulJ/GspJ family protein Machinery gene
  BG256_RS06860 (BG256_06860) comP 1388505..1389188 (+) 684 WP_071163116.1 DUF2572 family protein Machinery gene
  BG256_RS06865 (BG256_06865) comQ 1389181..1389468 (+) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  BG256_RS06870 (BG256_06870) recC 1389514..1392894 (+) 3381 WP_071163117.1 exodeoxyribonuclease V subunit gamma -
  BG256_RS06875 (BG256_06875) nrdR 1392949..1393398 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25417.32 Da        Isoelectric Point: 9.5163

>NTDB_id=203143 BG256_RS06860 WP_071163116.1 1388505..1389188(+) (comP) [Haemophilus influenzae strain NML-Hia-1]
MTIQKGIITLTILIFISGLLTVILLLDDNHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIA
LEGATDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=203143 BG256_RS06860 WP_071163116.1 1388505..1389188(+) (comP) [Haemophilus influenzae strain NML-Hia-1]
ATGACTATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAACCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAAGTTGAAATTAATGGCACCGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGTGCAGTGATTACCAGTGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

97.357

100

0.974

Multiple sequence alignment