Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   BG256_RS06850 Genome accession   NZ_CP017811
Coordinates   1387277..1387789 (+) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NML-Hia-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382277..1392789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG256_RS06830 (BG256_06830) nrfF 1382577..1383731 (-) 1155 WP_071163113.1 heme lyase NrfEFG subunit NrfF -
  BG256_RS06835 (BG256_06835) - 1383728..1384258 (-) 531 WP_071163114.1 DsbE family thiol:disulfide interchange protein -
  BG256_RS06840 (BG256_06840) nrfE 1384258..1386165 (-) 1908 WP_071163115.1 heme lyase NrfEFG subunit NrfE -
  BG256_RS06845 (BG256_06845) suhB 1386274..1387077 (-) 804 WP_048951686.1 inositol-1-monophosphatase -
  BG256_RS06850 (BG256_06850) comN 1387277..1387789 (+) 513 WP_013526183.1 pilus assembly FimT family protein Machinery gene
  BG256_RS06855 (BG256_06855) comO 1387789..1388505 (+) 717 WP_005651546.1 PulJ/GspJ family protein Machinery gene
  BG256_RS06860 (BG256_06860) comP 1388505..1389188 (+) 684 WP_071163116.1 DUF2572 family protein Machinery gene
  BG256_RS06865 (BG256_06865) comQ 1389181..1389468 (+) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=203141 BG256_RS06850 WP_013526183.1 1387277..1387789(+) (comN) [Haemophilus influenzae strain NML-Hia-1]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=203141 BG256_RS06850 WP_013526183.1 1387277..1387789(+) (comN) [Haemophilus influenzae strain NML-Hia-1]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTATTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TTGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment