Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BK049_RS16145 Genome accession   NZ_CP017786
Coordinates   3158933..3160666 (+) Length   577 a.a.
NCBI ID   WP_071168952.1    Uniprot ID   -
Organism   Bacillus xiamenensis strain VV3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3153933..3165666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS16120 (BK049_16120) - 3154083..3154343 (+) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -
  BK049_RS16125 (BK049_16125) - 3154333..3155223 (+) 891 WP_071168949.1 polyprenyl synthetase family protein -
  BK049_RS16130 (BK049_16130) dxs 3155375..3157276 (+) 1902 WP_071168950.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BK049_RS16135 (BK049_16135) - 3157273..3158127 (+) 855 WP_071168951.1 TlyA family RNA methyltransferase -
  BK049_RS16140 (BK049_16140) argR 3158449..3158898 (+) 450 WP_008358598.1 transcriptional regulator ArgR -
  BK049_RS16145 (BK049_16145) recN 3158933..3160666 (+) 1734 WP_071168952.1 DNA repair protein RecN Machinery gene
  BK049_RS16150 (BK049_16150) spoIVB 3160865..3162142 (+) 1278 WP_071168953.1 SpoIVB peptidase -
  BK049_RS16155 (BK049_16155) spo0A 3162427..3163230 (+) 804 WP_008358592.1 sporulation transcription factor Spo0A Regulator
  BK049_RS16165 (BK049_16165) - 3163687..3164787 (+) 1101 WP_008358589.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64658.54 Da        Isoelectric Point: 4.7136

>NTDB_id=202942 BK049_RS16145 WP_071168952.1 3158933..3160666(+) (recN) [Bacillus xiamenensis strain VV3]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREIGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALM
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIYSSLQNAYNALRNE
QGGLDWVGMASSELEQVSDINEDLKQLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQHRDSHLQTLKDKLDALSRDALLEALNVSELRKKWAKKLAKQIQAELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGRNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSNEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=202942 BK049_RS16145 WP_071168952.1 3158933..3160666(+) (recN) [Bacillus xiamenensis strain VV3]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTTCT
AACCGGGGAAACAGGTGCCGGAAAATCAATTATGATTGATGCTGTCTCACTTCTTGTAGGGGGAAGAGGATCATCTGAAT
TTGTCCGCTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCAGATCATCCTGTGTTTGCTTTATGC
GAAGAGCAGGGGATTGACGCATCGGATGAAATGATGATTCTTCGCCGGGATATCAATCAAAGCGGGAAAAGCATCTGCCG
CATTAATGGTAAGCTTGTCACCATCTCTCTTCTGCGAGAAATTGGCCGGCTGTTGCTCGATATACATGGACAGCATGATA
ATCAGCTATTGATGGAGGATGAAAATCATCTGCATCTGCTCGATCAATTTGGGGCAGAAGAAATTGCACCTGCTCTCATG
CAATATCAAGAAGCGTATGATCAATATATGAAGACGGCCCAAAAGCTCAAACAGCTGTCTGAAAATGAGCAAGAGATGGT
ACACCGTTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTCGAAAAGATCTACTCCTCGCTGCAAAATGCATATAATGCCTTGCGCAATGAG
CAAGGAGGGCTTGATTGGGTTGGAATGGCCTCAAGCGAGCTTGAGCAAGTTTCTGACATCAATGAAGATTTAAAACAGCT
CTCTGAACAAGTCTCGAACTCCTATTACCTATTAGAGGATTCGACTTTTCAAATGCGCAGTATGCTCGATCAGTTAGAAT
TCGACCCAGCTCGTCTTGATTTTATTGAGTCCAGGCTAAATGAGATGAAACAGCTGAAGCGAAAATACGGCACAACGGTA
GAGGAAATTTTAGAGTATGCGGCTAAGATTGAAGAGGAAATAGATCAAATTCAACATCGAGACAGCCACCTGCAAACACT
CAAAGACAAGCTTGATGCGTTAAGCCGAGATGCATTGCTTGAAGCGCTTAACGTTTCTGAGCTTCGCAAAAAATGGGCAA
AAAAACTAGCGAAGCAAATTCAAGCTGAATTGAAGGATTTATATATGGAGAAATCGTCCTTTGATACGGCCTTTTCCGTT
CGATATGCGCCATTTGGCAGTACGGATTGCCCGCTTTTAGATGGAAAGCCCGTTCAGCTCGGGAGAAACGGAATAGATCA
AGCGCAATTTGTCATTTCTACTAATCCTGGCGAACCGATGAAGTCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCGGTGAAGAGTATTTTCTCCGCCAAACAAGAAGTGACATCCATTATCTTTGATGAAGTGGATACAGGC
GTCAGCGGCAGAGTCGCACAGGCGATTGCTGAAAAAATTTATAAAGTAGCGGCAGGCTCACAAGTCCTATGCATTACGCA
TCTGCCGCAAGTAGCAGCAATGGCTGACACTCACCTCTTCATTTCTAAACGCTCTAAAGCTGGCAGAACACTGACGAGTG
TCAAACCATTAAGTAATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCAGGCGTAGAAGTCACAGAGCTGACAAAA
CAGCATGCAAAAGAATTATTGCATCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

76.256

100

0.763

Multiple sequence alignment