Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BK049_RS15965 | Genome accession | NZ_CP017786 |
| Coordinates | 3127819..3128154 (-) | Length | 111 a.a. |
| NCBI ID | WP_008360247.1 | Uniprot ID | - |
| Organism | Bacillus xiamenensis strain VV3 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3122819..3133154
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BK049_RS15915 (BK049_15915) | comGC | 3123032..3123325 (+) | 294 | WP_008360227.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BK049_RS15920 (BK049_15920) | comGD | 3123318..3123764 (+) | 447 | WP_008360229.1 | competence type IV pilus minor pilin ComGD | - |
| BK049_RS15925 (BK049_15925) | comGE | 3123748..3124065 (+) | 318 | WP_008360231.1 | competence type IV pilus minor pilin ComGE | - |
| BK049_RS15930 (BK049_15930) | comGF | 3124052..3124504 (+) | 453 | WP_008360233.1 | competence type IV pilus minor pilin ComGF | - |
| BK049_RS15935 (BK049_15935) | comGG | 3124501..3124884 (+) | 384 | WP_008360235.1 | competence type IV pilus minor pilin ComGG | - |
| BK049_RS15940 (BK049_15940) | - | 3124945..3125133 (+) | 189 | WP_008360237.1 | YqzE family protein | - |
| BK049_RS15945 (BK049_15945) | - | 3125167..3125493 (-) | 327 | WP_008360239.1 | YqzG/YhdC family protein | - |
| BK049_RS15950 (BK049_15950) | tapA | 3125746..3126273 (+) | 528 | WP_071169244.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BK049_RS15955 (BK049_15955) | - | 3126321..3126893 (+) | 573 | WP_008360243.1 | signal peptidase I | - |
| BK049_RS15960 (BK049_15960) | - | 3126951..3127751 (+) | 801 | WP_071168937.1 | TasA family protein | - |
| BK049_RS15965 (BK049_15965) | sinR | 3127819..3128154 (-) | 336 | WP_008360247.1 | helix-turn-helix domain-containing protein | Regulator |
| BK049_RS19105 | - | 3128188..3128352 (-) | 165 | WP_008360248.1 | anti-repressor SinI family protein | - |
| BK049_RS15970 (BK049_15970) | - | 3128537..3129334 (-) | 798 | WP_008360250.1 | YqhG family protein | - |
| BK049_RS15975 (BK049_15975) | - | 3129349..3131019 (-) | 1671 | WP_071169245.1 | SNF2-related protein | - |
| BK049_RS15980 (BK049_15980) | gcvT | 3131578..3132675 (+) | 1098 | WP_071168938.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12950.54 Da Isoelectric Point: 5.0026
>NTDB_id=202941 BK049_RS15965 WP_008360247.1 3127819..3128154(-) (sinR) [Bacillus xiamenensis strain VV3]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=202941 BK049_RS15965 WP_008360247.1 3127819..3128154(-) (sinR) [Bacillus xiamenensis strain VV3]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |