Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BK049_RS15915 Genome accession   NZ_CP017786
Coordinates   3123032..3123325 (+) Length   97 a.a.
NCBI ID   WP_008360227.1    Uniprot ID   A0A2G8IWC0
Organism   Bacillus xiamenensis strain VV3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3118032..3128325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS15885 (BK049_15885) - 3118813..3119055 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  BK049_RS15890 (BK049_15890) - 3119268..3119648 (+) 381 WP_071168934.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BK049_RS15900 (BK049_15900) - 3119874..3120746 (+) 873 WP_071168935.1 STAS domain-containing protein -
  BK049_RS15905 (BK049_15905) comGA 3120924..3121994 (+) 1071 WP_008360223.1 competence type IV pilus ATPase ComGA Machinery gene
  BK049_RS15910 (BK049_15910) comGB 3121975..3123015 (+) 1041 WP_071168936.1 competence type IV pilus assembly protein ComGB -
  BK049_RS15915 (BK049_15915) comGC 3123032..3123325 (+) 294 WP_008360227.1 competence type IV pilus major pilin ComGC Machinery gene
  BK049_RS15920 (BK049_15920) comGD 3123318..3123764 (+) 447 WP_008360229.1 competence type IV pilus minor pilin ComGD -
  BK049_RS15925 (BK049_15925) comGE 3123748..3124065 (+) 318 WP_008360231.1 competence type IV pilus minor pilin ComGE -
  BK049_RS15930 (BK049_15930) comGF 3124052..3124504 (+) 453 WP_008360233.1 competence type IV pilus minor pilin ComGF -
  BK049_RS15935 (BK049_15935) comGG 3124501..3124884 (+) 384 WP_008360235.1 competence type IV pilus minor pilin ComGG -
  BK049_RS15940 (BK049_15940) - 3124945..3125133 (+) 189 WP_008360237.1 YqzE family protein -
  BK049_RS15945 (BK049_15945) - 3125167..3125493 (-) 327 WP_008360239.1 YqzG/YhdC family protein -
  BK049_RS15950 (BK049_15950) tapA 3125746..3126273 (+) 528 WP_071169244.1 amyloid fiber anchoring/assembly protein TapA -
  BK049_RS15955 (BK049_15955) - 3126321..3126893 (+) 573 WP_008360243.1 signal peptidase I -
  BK049_RS15960 (BK049_15960) - 3126951..3127751 (+) 801 WP_071168937.1 TasA family protein -
  BK049_RS15965 (BK049_15965) sinR 3127819..3128154 (-) 336 WP_008360247.1 helix-turn-helix domain-containing protein Regulator

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10703.61 Da        Isoelectric Point: 6.8599

>NTDB_id=202940 BK049_RS15915 WP_008360227.1 3123032..3123325(+) (comGC) [Bacillus xiamenensis strain VV3]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGDVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=202940 BK049_RS15915 WP_008360227.1 3123032..3123325(+) (comGC) [Bacillus xiamenensis strain VV3]
ATGAATGATAAAGGATTTACCCTATTGGAAATGTTAATTGTCATGCTCGTGATTTCCATTCTTTTACTCATTACCATTCC
GAATATCACACGTCACCATCAAAGCATTCAAGCGAAGGGGTGTGAAGGGCTCAAATCAATGGTGAGTACACAGGTGATGG
CATATGAATTAGAGCATGACGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACC
TGTCCAAATGGAAAGGCTATTGTCATTCAAAACGGCGACGTGAAGCATGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IWC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment