Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BK049_RS15905 Genome accession   NZ_CP017786
Coordinates   3120924..3121994 (+) Length   356 a.a.
NCBI ID   WP_008360223.1    Uniprot ID   A0AAC9NBY2
Organism   Bacillus xiamenensis strain VV3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3115924..3126994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS15865 (BK049_15865) - 3115925..3117178 (+) 1254 WP_071168932.1 MFS transporter -
  BK049_RS15870 (BK049_15870) - 3117256..3117570 (+) 315 WP_071168933.1 MTH1187 family thiamine-binding protein -
  BK049_RS15875 (BK049_15875) - 3117595..3117768 (-) 174 WP_008360083.1 DUF2759 domain-containing protein -
  BK049_RS15880 (BK049_15880) - 3117926..3118564 (+) 639 WP_008360086.1 MBL fold metallo-hydrolase -
  BK049_RS15885 (BK049_15885) - 3118813..3119055 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  BK049_RS15890 (BK049_15890) - 3119268..3119648 (+) 381 WP_071168934.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BK049_RS15900 (BK049_15900) - 3119874..3120746 (+) 873 WP_071168935.1 STAS domain-containing protein -
  BK049_RS15905 (BK049_15905) comGA 3120924..3121994 (+) 1071 WP_008360223.1 competence type IV pilus ATPase ComGA Machinery gene
  BK049_RS15910 (BK049_15910) comGB 3121975..3123015 (+) 1041 WP_071168936.1 competence type IV pilus assembly protein ComGB -
  BK049_RS15915 (BK049_15915) comGC 3123032..3123325 (+) 294 WP_008360227.1 competence type IV pilus major pilin ComGC Machinery gene
  BK049_RS15920 (BK049_15920) comGD 3123318..3123764 (+) 447 WP_008360229.1 competence type IV pilus minor pilin ComGD -
  BK049_RS15925 (BK049_15925) comGE 3123748..3124065 (+) 318 WP_008360231.1 competence type IV pilus minor pilin ComGE -
  BK049_RS15930 (BK049_15930) comGF 3124052..3124504 (+) 453 WP_008360233.1 competence type IV pilus minor pilin ComGF -
  BK049_RS15935 (BK049_15935) comGG 3124501..3124884 (+) 384 WP_008360235.1 competence type IV pilus minor pilin ComGG -
  BK049_RS15940 (BK049_15940) - 3124945..3125133 (+) 189 WP_008360237.1 YqzE family protein -
  BK049_RS15945 (BK049_15945) - 3125167..3125493 (-) 327 WP_008360239.1 YqzG/YhdC family protein -
  BK049_RS15950 (BK049_15950) tapA 3125746..3126273 (+) 528 WP_071169244.1 amyloid fiber anchoring/assembly protein TapA -
  BK049_RS15955 (BK049_15955) - 3126321..3126893 (+) 573 WP_008360243.1 signal peptidase I -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40295.65 Da        Isoelectric Point: 9.3301

>NTDB_id=202939 BK049_RS15905 WP_008360223.1 3120924..3121994(+) (comGA) [Bacillus xiamenensis strain VV3]
MYGIEYVGQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRTGQVFVRMSTLPTVNDESLVIRILPQDHVPKTKYLSLYPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYATGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAITAQRLIELTCPFCGETCQLYCKLNRPVRRTNVFELLYGKKLGECVKEAKGEY
AHSSYETLQKLIRKGVALGYLSKNTYHRWVYEEAGI

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=202939 BK049_RS15905 WP_008360223.1 3120924..3121994(+) (comGA) [Bacillus xiamenensis strain VV3]
TTGTATGGTATTGAATATGTGGGACAAGAGCTGCTAGAAGAAGCTTGCCGCATGAGAGCATCTGATGTGCATATTGTACC
AAAAGAAAAGGAAGCTTCGGTATCTTTCCGTGTAGACTCAGATTTAATCCAGCAGCGAACCATCGATAAAAAAAGCGGGG
AGCGGTTAATTGCTCATTTTAAATTTTTATCCTCCATGGATATCGGTGAAAAAAGGAGACCGCAAAATGGGTCATTGGCT
GTGATGCTAAGAACTGGACAAGTGTTTGTACGGATGTCTACATTACCGACTGTGAATGATGAAAGTTTAGTGATTAGAAT
TTTACCGCAGGATCATGTCCCAAAAACAAAATATCTGTCGCTATATCCTAAAGCTTCAGCCAGATTATTATCATTTTTAA
ATCATTCGCATGGACTCATTTTATTTACTGGGCCAACAAATTCAGGGAAAACAACAACACTTTATTCATTGATACAGTTT
GCAAAAAAGCATTTCAATCGAAATATTATTACACTTGAGGACCCTGTGGAAACAAGAAATGAAGAAGTGCTACAGGTACA
AGTGAATGAAAAAGCAGGTATTACGTATGCGACAGGATTACGTGCTATTTTAAGACACGACCCAGATATGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACAGCAAGAACAGCAATAAGAGCAGCACTGACAGGTCATTTAGTGATGAGTACGCTGCAT
GCGAAAAATGCAAAAGGTGCCCTTTACCGAATGCTTGAATTTGGTGTCACGATGAATGAACTCGAACAAACCATGGTTGC
GATTACTGCGCAGCGTTTAATCGAGCTCACATGTCCTTTTTGCGGGGAAACGTGTCAGCTTTATTGCAAATTAAATCGCC
CGGTCAGGCGAACGAATGTGTTTGAATTACTTTACGGAAAGAAGCTTGGTGAGTGTGTCAAAGAGGCCAAAGGAGAATAT
GCTCACTCGTCATATGAAACATTGCAAAAATTAATTCGTAAAGGAGTGGCACTGGGCTATCTATCGAAAAACACATATCA
TCGCTGGGTATATGAAGAAGCAGGCATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.124

99.438

0.638

Multiple sequence alignment