Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CJZ70_RS21015 Genome accession   NZ_CP022890
Coordinates   4007839..4008528 (+) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain DKU_NT_02     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4002839..4013528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS20995 (CJZ70_20995) iolG 4003993..4005027 (+) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -
  CJZ70_RS21000 (CJZ70_21000) iolH 4005047..4005916 (+) 870 WP_014481413.1 sugar phosphate isomerase/epimerase -
  CJZ70_RS21005 (CJZ70_21005) iolI 4006002..4006838 (+) 837 WP_015250853.1 2-keto-myo-inositol isomerase -
  CJZ70_RS21010 (CJZ70_21010) iolJ 4006859..4007731 (+) 873 WP_003242766.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  CJZ70_RS21015 (CJZ70_21015) braR 4007839..4008528 (+) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  CJZ70_RS21020 (CJZ70_21020) yxdK 4008525..4009502 (+) 978 WP_069837879.1 two-component system sensor histidine kinase YxdK -
  CJZ70_RS21025 (CJZ70_21025) yxdL 4009646..4010419 (+) 774 WP_024572301.1 ABC transporter ATP-binding protein YxdL -
  CJZ70_RS21030 (CJZ70_21030) yxdM 4010394..4012262 (+) 1869 WP_095010808.1 ABC transporter permease YxdM -
  CJZ70_RS21035 (CJZ70_21035) yxeA 4012276..4012623 (+) 348 WP_015715011.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=202912 CJZ70_RS21015 WP_003243527.1 4007839..4008528(+) (braR) [Bacillus subtilis strain DKU_NT_02]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=202912 CJZ70_RS21015 WP_003243527.1 4007839..4008528(+) (braR) [Bacillus subtilis strain DKU_NT_02]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGAGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment