Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BK049_RS07640 Genome accession   NZ_CP017786
Coordinates   1521173..1522552 (-) Length   459 a.a.
NCBI ID   WP_071168236.1    Uniprot ID   A0AAC9NBF5
Organism   Bacillus xiamenensis strain VV3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1516173..1527552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK049_RS07620 (BK049_07620) ispF 1517653..1518129 (-) 477 WP_007496273.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BK049_RS07625 (BK049_07625) ispD 1518133..1518822 (-) 690 WP_008356486.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BK049_RS07630 (BK049_07630) - 1518836..1519936 (-) 1101 WP_008356484.1 PIN/TRAM domain-containing protein -
  BK049_RS07635 (BK049_07635) disA 1520091..1521170 (-) 1080 WP_008356482.1 DNA integrity scanning diadenylate cyclase DisA -
  BK049_RS07640 (BK049_07640) radA 1521173..1522552 (-) 1380 WP_071168236.1 DNA repair protein RadA Machinery gene
  BK049_RS07645 (BK049_07645) clpC 1522646..1525081 (-) 2436 WP_008356478.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  BK049_RS07650 (BK049_07650) - 1525078..1526169 (-) 1092 WP_071168237.1 protein arginine kinase -
  BK049_RS07655 (BK049_07655) - 1526174..1526731 (-) 558 WP_034738425.1 UvrB/UvrC motif-containing protein -
  BK049_RS07660 (BK049_07660) - 1526746..1527210 (-) 465 WP_008356472.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49979.46 Da        Isoelectric Point: 7.3829

>NTDB_id=202911 BK049_RS07640 WP_071168236.1 1521173..1522552(-) (radA) [Bacillus xiamenensis strain VV3]
MAKTKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDKNQNVLYISGEESIKQTKLRADRLGIESASLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLSEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANIDGWKKPRGIELVGVENVAEALRISLGGA

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=202911 BK049_RS07640 WP_071168236.1 1521173..1522552(-) (radA) [Bacillus xiamenensis strain VV3]
ATGGCTAAGACAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCAGGCTG
CGGCACGTGGAACAGTATGACAGAAGAGGTCGTTCGTAAAGAGCCGGCAAACCGTCGAAGTGCTTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCCATTGAAACATCCGAAGAACCCCGAATTAAAACGAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGCTCTCTCGTTCTTATTGGCGGTGATCCTGGGATTGGAAAGTCCACACT
ATTATTACAAGTTTCAGCACAGCTCTCAGACAAGAATCAGAATGTGTTGTACATATCTGGTGAGGAATCGATTAAACAAA
CGAAGCTTAGAGCGGACCGCCTTGGCATTGAAAGTGCCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAAGAGATGAAACCCGCTTTTGTGGTGGTGGATTCAATTCAAACCGTTTATCAAAGCGATATTACGTCAGC
ACCTGGATCTGTTTCTCAGGTGAGGGAATGCACAGCACAGCTGATGAAAATTGCTAAGACGAATGGTATTCCGATTTTTA
TCGTTGGTCACGTGACCAAAGAAGGCTCGATTGCAGGCCCGCGCCTGTTAGAGCATATGGTGGATACGGTTCTTTATTTT
GAAGGGGAGCGGCACCATACGTTTCGCATTTTACGAGCGGTAAAAAACCGTTTTGGTTCAACGAATGAATTAGGGATTTT
TGAAATGAGAGAGGAAGGGCTCTCAGAAGTTTTAAACCCATCAGAAATCTTCTTAGAAGAGCGGTCAGCAGGTGTATCTG
GATCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCCGTTCTTGTGGAAATACAAGCATTAATTTCACCGACAAGCTTT
GGAAACCCGCGGAGAATGGCCACAGGCCTTGATCATAATCGTGTGTCATTGCTCATGGCTGTGTTAGAAAAACGTGTAGG
GCTGCTTCTGCAAAATCAAGATGCATATTTAAAGGTCGCAGGTGGTGTAAAGCTTGACGAACCAGCGATTGATTTGGCCA
TTGCCGTCAGTATTGCATCAAGCTTTAAAGACGCAGCGCCGCACCAAGCGGATTGCTTTATAGGAGAAGTTGGTCTGACG
GGAGAAGTCAGAAGAGTTTCAAGAATTGAACAGCGTGTGCAGGAAGCTGCTAAACTAGGATTTAAGCGAATGTTTATTCC
TCAGGCGAATATAGATGGATGGAAAAAGCCGAGAGGGATTGAGTTAGTCGGTGTAGAAAATGTAGCGGAGGCACTTCGTA
TTTCACTAGGGGGAGCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

87.118

99.782

0.869
  radA Streptococcus mitis NCTC 12261

61.589

98.693

0.608
  radA Streptococcus pneumoniae Rx1

61.589

98.693

0.608
  radA Streptococcus pneumoniae D39

61.589

98.693

0.608
  radA Streptococcus pneumoniae R6

61.589

98.693

0.608
  radA Streptococcus pneumoniae TIGR4

61.589

98.693

0.608
  radA Streptococcus mitis SK321

61.589

98.693

0.608

Multiple sequence alignment