Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CJZ70_RS15105 Genome accession   NZ_CP022890
Coordinates   2856376..2857023 (-) Length   215 a.a.
NCBI ID   WP_069837394.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_NT_02     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2851376..2862023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS15080 (CJZ70_15080) nsrR 2852975..2853415 (+) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  CJZ70_RS15085 (CJZ70_15085) lytF 2853567..2855033 (+) 1467 WP_069837395.1 peptidoglycan endopeptidase LytF -
  CJZ70_RS15090 (CJZ70_15090) yhdC 2855074..2855397 (-) 324 WP_014476269.1 YqzG/YhdC family protein -
  CJZ70_RS15095 (CJZ70_15095) yhdB 2855598..2855840 (+) 243 WP_003233373.1 YhdB family protein -
  CJZ70_RS15100 (CJZ70_15100) yhdA 2855855..2856379 (-) 525 WP_038829245.1 FMN-dependent NADPH-azoreductase -
  CJZ70_RS15105 (CJZ70_15105) vraR 2856376..2857023 (-) 648 WP_069837394.1 two-component system response regulator YhcZ Regulator
  CJZ70_RS15110 (CJZ70_15110) yhcY 2857020..2858159 (-) 1140 WP_032721229.1 two-component system sensor histidine kinase YhcY -
  CJZ70_RS15115 (CJZ70_15115) pgcA 2858308..2860053 (-) 1746 WP_069837393.1 phosphoglucomutase -
  CJZ70_RS15120 (CJZ70_15120) glpD 2860185..2861852 (-) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24148.79 Da        Isoelectric Point: 6.5025

>NTDB_id=202877 CJZ70_RS15105 WP_069837394.1 2856376..2857023(-) (vraR) [Bacillus subtilis strain DKU_NT_02]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPQTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=202877 CJZ70_RS15105 WP_069837394.1 2856376..2857023(-) (vraR) [Bacillus subtilis strain DKU_NT_02]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACGGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGCAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGGTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTAA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACTAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGATCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CAAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.455

97.209

0.442
  degU Bacillus subtilis subsp. subtilis str. 168

38.428

100

0.409