Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   CJZ70_RS11980 Genome accession   NZ_CP022890
Coordinates   2272850..2273875 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain DKU_NT_02     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2267850..2278875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS11945 (CJZ70_11945) panEA 2268335..2269231 (-) 897 WP_014479721.1 2-dehydropantoate 2-reductase -
  CJZ70_RS11950 (CJZ70_11950) ylbP 2269391..2269873 (+) 483 WP_014476736.1 N-acetyltransferase -
  CJZ70_RS11955 (CJZ70_11955) gerR 2269930..2270511 (-) 582 WP_014479720.1 sporulation specific transcriptional regulator GerR -
  CJZ70_RS11960 (CJZ70_11960) rpmF 2270657..2270836 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  CJZ70_RS11965 (CJZ70_11965) ylbN 2270858..2271376 (-) 519 WP_014479718.1 DUF177 domain-containing protein -
  CJZ70_RS11970 (CJZ70_11970) - 2271404..2271589 (+) 186 WP_003232215.1 hypothetical protein -
  CJZ70_RS11975 (CJZ70_11975) tmcAL 2271586..2272833 (+) 1248 WP_014479717.1 nucleotidyltransferase -
  CJZ70_RS11980 (CJZ70_11980) sepM 2272850..2273875 (-) 1026 WP_003245451.1 protease DdcP Regulator
  CJZ70_RS11985 (CJZ70_11985) ylbK 2273877..2274659 (-) 783 WP_003232221.1 patatin family protein -
  CJZ70_RS11990 (CJZ70_11990) spoVV 2274840..2276066 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  CJZ70_RS11995 (CJZ70_11995) coaD 2276077..2276562 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  CJZ70_RS12000 (CJZ70_12000) rsmD 2276567..2277121 (-) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CJZ70_RS12005 (CJZ70_12005) ylbG 2277444..2277716 (-) 273 WP_009967171.1 YlbG family protein -
  CJZ70_RS12010 (CJZ70_12010) ylbF 2277771..2278220 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  CJZ70_RS12015 (CJZ70_12015) ylbE 2278336..2278575 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=202848 CJZ70_RS11980 WP_003245451.1 2272850..2273875(-) (sepM) [Bacillus subtilis strain DKU_NT_02]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=202848 CJZ70_RS11980 WP_003245451.1 2272850..2273875(-) (sepM) [Bacillus subtilis strain DKU_NT_02]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGTCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402