Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   CJZ70_RS12010 Genome accession   NZ_CP022890
Coordinates   2277771..2278220 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain DKU_NT_02     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2272771..2283220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS11980 (CJZ70_11980) sepM 2272850..2273875 (-) 1026 WP_003245451.1 protease DdcP Regulator
  CJZ70_RS11985 (CJZ70_11985) ylbK 2273877..2274659 (-) 783 WP_003232221.1 patatin family protein -
  CJZ70_RS11990 (CJZ70_11990) spoVV 2274840..2276066 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  CJZ70_RS11995 (CJZ70_11995) coaD 2276077..2276562 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  CJZ70_RS12000 (CJZ70_12000) rsmD 2276567..2277121 (-) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CJZ70_RS12005 (CJZ70_12005) ylbG 2277444..2277716 (-) 273 WP_009967171.1 YlbG family protein -
  CJZ70_RS12010 (CJZ70_12010) ylbF 2277771..2278220 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  CJZ70_RS12015 (CJZ70_12015) ylbE 2278336..2278575 (-) 240 WP_003232231.1 YlbE-like family protein -
  CJZ70_RS12020 (CJZ70_12020) ylbD 2278591..2278989 (-) 399 WP_046160384.1 YlbD family protein -
  CJZ70_RS12025 (CJZ70_12025) ylbC 2279220..2280260 (-) 1041 WP_041850862.1 CAP domain-containing protein -
  CJZ70_RS12030 (CJZ70_12030) ylbB 2280344..2280790 (-) 447 WP_046160383.1 CBS domain-containing protein -
  CJZ70_RS12035 (CJZ70_12035) ylbA 2280930..2281292 (+) 363 WP_003232238.1 YugN family protein -
  CJZ70_RS12040 (CJZ70_12040) ctaG 2281324..2282217 (-) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  CJZ70_RS12045 (CJZ70_12045) ctaF 2282245..2282577 (-) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  CJZ70_RS12050 (CJZ70_12050) ctaE 2282580..2283203 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=202849 CJZ70_RS12010 WP_003221370.1 2277771..2278220(-) (ylbF) [Bacillus subtilis strain DKU_NT_02]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=202849 CJZ70_RS12010 WP_003221370.1 2277771..2278220(-) (ylbF) [Bacillus subtilis strain DKU_NT_02]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment