Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   DN94_01815 Genome accession   CP007565
Coordinates   312723..313769 (+) Length   348 a.a.
NCBI ID   AHX74502.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 307723..318769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_01800 - 308981..310636 (+) 1656 AHX74499.1 ABC transporter substrate-binding protein -
  DN94_01805 - 310755..311669 (+) 915 AHX74500.1 peptide ABC transporter permease -
  DN94_01810 - 311679..312710 (+) 1032 AHX74501.1 peptide ABC transporter permease -
  DN94_01815 oppD 312723..313769 (+) 1047 AHX74502.1 peptide ABC transporter ATP-binding protein Regulator
  DN94_01820 amiF 313769..314701 (+) 933 AHX74503.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38759.23 Da        Isoelectric Point: 4.7128

>NTDB_id=20284 DN94_01815 AHX74502.1 312723..313769(+) (oppD) [Streptococcus agalactiae strain 138spar]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGDVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRLAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=20284 DN94_01815 AHX74502.1 312723..313769(+) (oppD) [Streptococcus agalactiae strain 138spar]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGGATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGTGGAAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCGGAGCCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAATGATTACCCACATCAGTGGTCTGGAGGAATG
CGCCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTTTAGCAGTTATGTATGCAGGGAAAATTGTTGAATTTGGAACTGTT
GATGAGGTCTTTTATAATCCACAACATCCATATACTTGGGGATTGTTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAATCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.713

0.787
  amiE Streptococcus salivarius strain HSISS4

54.867

97.414

0.534
  amiE Streptococcus thermophilus LMG 18311

54.277

97.414

0.529
  amiE Streptococcus thermophilus LMD-9

54.277

97.414

0.529

Multiple sequence alignment