Detailed information NTG0020285

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DN94_01820
• Genome accession: CP007565
• Coordinates: 313769..314701 (+)
• Length: 310 a.a.
• NCBI ID: AHX74503.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain 138spar
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 308769..319701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DN94_01800	-	308981..310636 (+)	1656	AHX74499.1	ABC transporter substrate-binding protein	-
DN94_01805	-	310755..311669 (+)	915	AHX74500.1	peptide ABC transporter permease	-
DN94_01810	-	311679..312710 (+)	1032	AHX74501.1	peptide ABC transporter permease	-
DN94_01815	oppD	312723..313769 (+)	1047	AHX74502.1	peptide ABC transporter ATP-binding protein	Regulator
DN94_01820	amiF	313769..314701 (+)	933	AHX74503.1	peptide ABC transporter substrate-binding protein	Regulator

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 34869.70 Da
• Isoelectric Point: 6.7314

>NTDB_id=20285 DN94_01820 AHX74503.1 313769..314701(+) (amiF) [Streptococcus agalactiae strain 138spar]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTIGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTPQEAEEYKKQIL

Nucleotide

• Length: 933 bp

>NTDB_id=20285 DN94_01820 AHX74503.1 313769..314701(+) (amiF) [Streptococcus agalactiae strain 138spar]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGCGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCATTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGAGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGACATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCACGAATTTTCAGGTGGACAACGACAA
CGTATAGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGAAAACTGTTAGAAGTTGGAACATCCGATGAT
GTTTATAACAATCCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACACCTGGTCATT
TTGTTTTATCTACACCTCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-267)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.87	99.355	0.545
amiF	Streptococcus thermophilus LMG 18311	54.545	99.355	0.542
amiF	Streptococcus salivarius strain HSISS4	54.754	98.387	0.539