Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   CJZ70_RS10995 Genome accession   NZ_CP022890
Coordinates   2071839..2072270 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain DKU_NT_02     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2066839..2077270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS10985 (CJZ70_10985) hexA 2068323..2070899 (-) 2577 WP_014479821.1 DNA mismatch repair protein MutS Machinery gene
  CJZ70_RS10990 (CJZ70_10990) cotE 2071032..2071577 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  CJZ70_RS10995 (CJZ70_10995) ymcA 2071839..2072270 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  CJZ70_RS11000 (CJZ70_11000) miaB 2072272..2073801 (-) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CJZ70_RS11005 (CJZ70_11005) kbl 2073949..2075127 (-) 1179 WP_095010669.1 glycine C-acetyltransferase -
  CJZ70_RS11010 (CJZ70_11010) tdh 2075140..2076183 (-) 1044 WP_095010670.1 L-threonine 3-dehydrogenase -
  CJZ70_RS11015 (CJZ70_11015) spoVS 2076449..2076709 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=202837 CJZ70_RS10995 WP_003231834.1 2071839..2072270(-) (ymcA) [Bacillus subtilis strain DKU_NT_02]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=202837 CJZ70_RS10995 WP_003231834.1 2071839..2072270(-) (ymcA) [Bacillus subtilis strain DKU_NT_02]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1