Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BK055_RS01980 Genome accession   NZ_CP017775
Coordinates   395285..396238 (+) Length   317 a.a.
NCBI ID   WP_013351008.1    Uniprot ID   A0AAP7N4J3
Organism   Bacillus velezensis strain 9912D     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 390285..401238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK055_RS01955 (BK055_01955) - 390330..391757 (+) 1428 WP_088056326.1 sensor histidine kinase -
  BK055_RS01960 (BK055_01960) rapC 391916..393064 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  BK055_RS01965 (BK055_01965) phrC 393048..393167 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BK055_RS01970 (BK055_01970) - 393317..393427 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  BK055_RS01975 (BK055_01975) - 393507..394871 (-) 1365 WP_025649998.1 aspartate kinase -
  BK055_RS01980 (BK055_01980) ceuB 395285..396238 (+) 954 WP_013351008.1 ABC transporter permease Machinery gene
  BK055_RS01985 (BK055_01985) - 396228..397175 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  BK055_RS01990 (BK055_01990) - 397169..397927 (+) 759 WP_071181530.1 ABC transporter ATP-binding protein -
  BK055_RS01995 (BK055_01995) - 397949..398899 (+) 951 WP_065521914.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34975.26 Da        Isoelectric Point: 9.6741

>NTDB_id=202785 BK055_RS01980 WP_013351008.1 395285..396238(+) (ceuB) [Bacillus velezensis strain 9912D]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFESRLPRLASIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=202785 BK055_RS01980 WP_013351008.1 395285..396238(+) (ceuB) [Bacillus velezensis strain 9912D]
ATGAAGCTACGTTACTTACTTTTGTTACTGGCGGTATTGGCGTGTACTTCTATTTTTATCGGGGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGAAAGCCGGCTGCCGCGTCTGGCGAGCATTATTA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATTATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCGAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
AATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCGTCTTGGCTTCAGGGGGATTTCTCATTGGTCGTTAAAGGCCGCTACGAGCTTTTATACCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAGTTTACGGTGGCTGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATCATTGTGTCGCTTATCGCTTCACTTGTGATTTTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCGAATATGGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTGTTAGGTGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATATTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment