Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   Spy49_1138c Genome accession   CP000829
Coordinates   1132738..1133334 (-) Length   198 a.a.
NCBI ID   ACI61426.1    Uniprot ID   -
Organism   Streptococcus pyogenes NZ131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127738..1138334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Spy49_1135c - 1129234..1129929 (-) 696 ACI61423.1 hypothetical protein -
  Spy49_1136c murF 1130009..1131400 (-) 1392 ACI61424.1 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase -
  Spy49_1137c ddlA 1131591..1132637 (-) 1047 ACI61425.1 D-alanine--D-alanine ligase -
  Spy49_1138c recR 1132738..1133334 (-) 597 ACI61426.1 Recombination protein recR Machinery gene
  Spy49_1139c - 1133381..1133572 (-) 192 ACI61427.1 hypothetical protein -
  Spy49_1140c fdhC 1134132..1134947 (-) 816 ACI61428.1 Formate/nitrite transporter family member -
  Spy49_1141c - 1135034..1135576 (-) 543 ACI61429.1 hypothetical protein -
  Spy49_1142c - 1135737..1136258 (-) 522 ACI61430.1 Transcriptional regulator, biotin repressor family -
  Spy49_1143c gpmA 1136365..1137060 (-) 696 ACI61431.1 Phosphoglycerate mutase -
  Spy49_1144 pyrD 1137357..1138238 (+) 882 ACI61432.1 Dihydroorotate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21644.79 Da        Isoelectric Point: 4.8853

>NTDB_id=20274 Spy49_1138c ACI61426.1 1132738..1133334(-) (recR) [Streptococcus pyogenes NZ131]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=20274 Spy49_1138c ACI61426.1 1132738..1133334(-) (recR) [Streptococcus pyogenes NZ131]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAACTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGATACGAGTCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCATGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTGTGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGAATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.889

100

0.889
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5