Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   BKP58_RS05950 Genome accession   NZ_CP017763
Coordinates   1062444..1063565 (-) Length   373 a.a.
NCBI ID   WP_235091746.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1057444..1068565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS05920 (BKP58_05960) cwlQ 1057582..1058316 (+) 735 WP_014479451.1 bifunctional muramidase/murein lytic transglycosylase -
  BKP58_RS05925 (BKP58_05965) bhbI 1058571..1058969 (+) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  BKP58_RS05930 (BKP58_05970) spxH 1058966..1059865 (+) 900 WP_003245184.1 protease adaptor protein SpxH -
  BKP58_RS05940 (BKP58_05980) - 1060180..1060347 (+) 168 WP_003244944.1 hypothetical protein -
  BKP58_RS05945 (BKP58_05985) pepF 1060385..1062214 (-) 1830 WP_173401378.1 oligoendopeptidase F -
  BKP58_RS05950 (BKP58_05990) coiA 1062444..1063565 (-) 1122 WP_235091746.1 competence protein CoiA Machinery gene
  BKP58_RS22655 - 1063639..1063761 (+) 123 WP_003245684.1 hypothetical protein -
  BKP58_RS05955 (BKP58_05995) mecA 1063756..1064412 (-) 657 WP_014479448.1 adaptor protein MecA Regulator
  BKP58_RS22660 - 1064379..1064519 (-) 141 WP_119122854.1 hypothetical protein -
  BKP58_RS05960 (BKP58_06000) yjbE 1064689..1065345 (+) 657 WP_014479447.1 TerC family protein -
  BKP58_RS05965 (BKP58_06005) spx 1065388..1065783 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  BKP58_RS05970 (BKP58_06010) yjbC 1065964..1066542 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  BKP58_RS05975 (BKP58_06015) yjbB 1066706..1067923 (-) 1218 WP_072592593.1 MFS transporter -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43795.83 Da        Isoelectric Point: 10.0622

>NTDB_id=202648 BKP58_RS05950 WP_235091746.1 1062444..1063565(-) (coiA) [Bacillus subtilis strain 29R7-12]
MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQRASPILEP
YIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAFHWQFINASPY
RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGADDLFFTEPKPSIQYSGWTKAIHRFRHKPHRFNSKEINRL
RLLFYEKRQTSFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNKNIALRFECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=202648 BKP58_RS05950 WP_235091746.1 1062444..1063565(-) (coiA) [Bacillus subtilis strain 29R7-12]
ATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACGGTTCTTCTGTCCGGTATGCGGGGGAGAGCT
AGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCTCCATAGACATCGAACCGG
AAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAAACACAACGGGCTTCACCAATATTGGAGCCG
TATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCAAGGAGCATATGCTTGCTGTTGAATATCAATGCGC
CACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAGAAGGAATCATTCCGCAGTGGATTATGGGAT
ACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTTCATTGGCAGTTTATCAATGCAAGTCCATAC
AGAGAGCTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAGCCACATCATTCCATTCTACACAAACCATTC
TTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATCTTTTTTTCACTGAACCGAAACCCTCAATTC
AATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCATCGGTTTAACTCAAAGGAAATAAATCGCCTT
AGGCTGCTGTTTTATGAGAAGCGGCAGACATCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTGTATTTGTTTATGACGGATCTTGGAGGTAAACGTGCGCCAA
TTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAGAACATTGCACTCAGGTTTGAATGCAGCGAA
GAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.391

100

0.984


Multiple sequence alignment