Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BKP56_RS02855 Genome accession   NZ_CP017761
Coordinates   581376..581909 (-) Length   177 a.a.
NCBI ID   WP_072693634.1    Uniprot ID   A0A1L4BWU1
Organism   Marinilactibacillus sp. 15R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 576376..586909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP56_RS02835 (BKP56_02820) dnaB 576933..578306 (-) 1374 WP_072695931.1 replicative DNA helicase -
  BKP56_RS02840 (BKP56_02825) rplI 578477..578929 (-) 453 WP_072693631.1 50S ribosomal protein L9 -
  BKP56_RS02845 (BKP56_02830) - 578955..580952 (-) 1998 WP_072693632.1 DHH family phosphoesterase -
  BKP56_RS02850 (BKP56_02835) rpsR 581113..581346 (-) 234 WP_072693633.1 30S ribosomal protein S18 -
  BKP56_RS02855 (BKP56_02840) ssb 581376..581909 (-) 534 WP_072693634.1 single-stranded DNA-binding protein Machinery gene
  BKP56_RS02860 (BKP56_02845) rpsF 581970..582269 (-) 300 WP_072693635.1 30S ribosomal protein S6 -
  BKP56_RS02865 (BKP56_02850) gyrA 582509..585019 (-) 2511 WP_198034016.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19968.65 Da        Isoelectric Point: 4.5964

>NTDB_id=202577 BKP56_RS02855 WP_072693634.1 581376..581909(-) (ssb) [Marinilactibacillus sp. 15R]
MINNVVLVGRMTRDAELRYTGSGTAVASFSIAVERTFTNAQGERETDFINCVAWRKTAEIISNFTRKGSLVGVTGRIQTR
NYTNNEGRKVYITEVVCENFQMLEPKSVTEKRSQNDNDSSGYSNNANYSNQNSNTQRNNQAPGNNQNQNKNNFANFDEDP
FEKNDDPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=202577 BKP56_RS02855 WP_072693634.1 581376..581909(-) (ssb) [Marinilactibacillus sp. 15R]
TTGATTAATAATGTAGTATTAGTGGGAAGAATGACTCGTGATGCTGAATTACGTTATACAGGAAGTGGTACTGCTGTAGC
TTCTTTTTCCATAGCGGTTGAACGTACTTTTACAAACGCCCAAGGAGAAAGAGAAACAGACTTTATTAACTGTGTAGCTT
GGAGAAAAACGGCAGAAATTATTTCTAATTTCACTCGTAAAGGTTCTCTAGTCGGTGTTACAGGACGTATTCAAACACGT
AACTATACGAATAATGAAGGTCGTAAAGTGTATATTACTGAAGTTGTTTGTGAAAATTTCCAAATGTTAGAGCCGAAATC
CGTTACAGAGAAACGTAGTCAAAATGATAACGATTCTTCAGGATATTCTAATAACGCAAATTATTCCAATCAAAACAGTA
ATACACAACGAAATAACCAGGCTCCTGGAAATAATCAAAATCAAAATAAGAATAATTTTGCTAATTTCGATGAAGATCCA
TTTGAAAAAAATGATGATCCGATTGATATTTCAGATGACGATTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L4BWU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.222

100

0.582
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.672

100

0.537

Multiple sequence alignment