Detailed information NTG0202552

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: BJN34_RS02300
• Genome accession: NZ_CP017757
• Coordinates: 482119..483228 (-)
• Length: 369 a.a.
• NCBI ID: WP_078195173.1
• Uniprot ID: -
• Organism: Cupriavidus necator strain NH9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 477119..488228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJN34_RS02275 (BJN34_02250)	ntrB	477162..478067 (-)	906	WP_078195168.1	nitrate ABC transporter permease	-
BJN34_RS02280 (BJN34_02255)	-	478120..479430 (-)	1311	WP_078195169.1	CmpA/NrtA family ABC transporter substrate-binding protein	-
BJN34_RS02285 (BJN34_02260)	-	479796..480437 (-)	642	WP_078195170.1	ANTAR domain-containing protein	-
BJN34_RS02290 (BJN34_02265)	-	480693..481394 (+)	702	WP_078195171.1	fumarylacetoacetate hydrolase family protein	-
BJN34_RS02295 (BJN34_02270)	maiA	481399..482046 (+)	648	WP_078195172.1	maleylacetoacetate isomerase	-
BJN34_RS02300 (BJN34_02275)	pilA	482119..483228 (-)	1110	WP_078195173.1	signal recognition particle-docking protein FtsY	Machinery gene
BJN34_RS02305 (BJN34_02280)	-	483445..485004 (+)	1560	WP_078195174.1	pitrilysin family protein	-
BJN34_RS02310 (BJN34_02285)	-	485014..486402 (+)	1389	WP_078195175.1	pitrilysin family protein	-
BJN34_RS02315 (BJN34_02290)	rsmD	486452..487099 (+)	648	WP_206363357.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
BJN34_RS02320 (BJN34_02295)	coaD	487344..487829 (+)	486	WP_010814369.1	pantetheine-phosphate adenylyltransferase	-
BJN34_RS02325 (BJN34_02300)	-	487898..488158 (+)	261	WP_078195177.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 39380.73 Da
• Isoelectric Point: 6.3067

>NTDB_id=202552 BJN34_RS02300 WP_078195173.1 482119..483228(-) (pilA) [Cupriavidus necator strain NH9]
MFSFWKKRKAEPAPVEAPAPAPAQVEVPAPAPAPAPTPVPAPAPVAAPVPAPVPAPETLELVPPPAPTTESKLGWMQRLR
TGLSKTSRNIGTLFVGVKVDEDLFEELETALLMADAGVEATEYLLGELRKRVKAERIETAEGVKAALRELLTQLLRPLEK
TMALGREQPLVMMIAGVNGAGKTTSIGKLCKHFQSYDQKVLLAAGDTFRAAAREQLTIWGERNNVTVVAQESGDPAAVIF
DAVNAAKARGIDIVMADTAGRLPTQLHLMEELRKVKRVISKAMPSAPHEVLLVIDANTGQNALQQTRAFDDALGLTGLIV
TKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFKADEFAEALLG

Nucleotide

• Length: 1110 bp

>NTDB_id=202552 BJN34_RS02300 WP_078195173.1 482119..483228(-) (pilA) [Cupriavidus necator strain NH9]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCCGAGCCCGCGCCAGTCGAGGCGCCAGCCCCGGCCCCCGCTCAGGTCGAGGT
CCCCGCACCCGCTCCCGCGCCGGCCCCCACGCCTGTGCCAGCCCCGGCGCCCGTGGCGGCTCCGGTCCCTGCGCCGGTGC
CCGCCCCTGAGACGCTCGAACTGGTGCCGCCGCCCGCCCCCACTACGGAATCGAAGCTGGGCTGGATGCAGCGCCTGCGT
ACCGGCCTGTCCAAGACCAGCCGCAACATCGGCACGCTGTTTGTCGGCGTCAAGGTCGACGAGGACCTGTTCGAAGAGCT
GGAAACCGCGCTGCTGATGGCCGATGCCGGCGTCGAAGCCACCGAGTACCTGCTGGGCGAACTGCGCAAGCGCGTCAAGG
CCGAGCGCATCGAGACCGCTGAAGGCGTCAAGGCGGCGCTGCGCGAACTGCTGACCCAGTTGCTGCGCCCGCTGGAAAAG
ACCATGGCGCTGGGCCGCGAGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGG
CAAGCTGTGCAAGCACTTCCAGAGTTATGACCAGAAGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCG
AGCAGCTGACGATCTGGGGCGAGCGCAACAACGTCACCGTGGTGGCGCAGGAAAGCGGCGACCCGGCGGCGGTGATCTTC
GACGCCGTCAACGCGGCCAAGGCGCGCGGCATCGACATCGTCATGGCCGACACCGCTGGGCGCCTGCCGACGCAGCTGCA
CCTGATGGAAGAGCTCAGGAAGGTCAAGCGCGTAATCAGCAAAGCCATGCCGAGCGCGCCGCACGAAGTGCTGCTGGTGA
TCGACGCCAATACCGGCCAGAACGCCCTGCAGCAAACCCGCGCCTTCGACGACGCGCTGGGCCTGACCGGGCTGATCGTG
ACCAAGCTCGACGGCACCGCCAAGGGCGGCATCCTGGCGGCGATCGCGCGCCAGCGCCCGGTGCCGGTCTACTTCATCGG
CGTGGGCGAGAAGGTGGAAGACCTGCAGCCGTTCAAGGCGGATGAGTTCGCCGAGGCGCTGTTGGGGTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (94-149)

• SRP54-type protein, GTPase domain (SRP54) (170-369)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	56.72	100	0.572