Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BI197_RS17015 Genome accession   NZ_CP017747
Coordinates   3541010..3541129 (+) Length   39 a.a.
NCBI ID   WP_069473622.1    Uniprot ID   -
Organism   Bacillus velezensis strain SYBC H47     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3536010..3546129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS16995 - 3536360..3536872 (+) 513 Protein_3391 bacteriocin biosynthesis protein AlbG -
  BI197_RS17000 - 3536879..3538255 (-) 1377 WP_071392425.1 YncE family protein -
  BI197_RS17005 - 3538295..3539650 (-) 1356 WP_071392426.1 YncE family protein -
  BI197_RS17010 rapF 3539881..3541026 (+) 1146 WP_079890910.1 tetratricopeptide repeat protein Regulator
  BI197_RS17015 phrF 3541010..3541129 (+) 120 WP_069473622.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BI197_RS17020 - 3541328..3541531 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  BI197_RS17025 - 3541545..3541748 (+) 204 WP_069473623.1 hypothetical protein -
  BI197_RS19910 - 3541783..3541968 (+) 186 Protein_3398 DUF4177 domain-containing protein -
  BI197_RS17030 - 3542156..3542437 (+) 282 WP_014306021.1 hypothetical protein -
  BI197_RS17035 - 3542481..3542993 (+) 513 WP_069473625.1 stage II sporulation protein M -
  BI197_RS17045 - 3543584..3543802 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  BI197_RS17050 speB 3543972..3544844 (-) 873 WP_003151054.1 agmatinase -
  BI197_RS17055 speE 3544904..3545734 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4282.10 Da        Isoelectric Point: 8.0195

>NTDB_id=202483 BI197_RS17015 WP_069473622.1 3541010..3541129(+) (phrF) [Bacillus velezensis strain SYBC H47]
MKLKYKLALTCLAVSTVFVSADIASAPEHQFEIAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=202483 BI197_RS17015 WP_069473622.1 3541010..3541129(+) (phrF) [Bacillus velezensis strain SYBC H47]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAATTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436

Multiple sequence alignment