Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   BI197_RS09610 Genome accession   NZ_CP017747
Coordinates   2042823..2043776 (-) Length   317 a.a.
NCBI ID   WP_070081621.1    Uniprot ID   -
Organism   Bacillus velezensis strain SYBC H47     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2037823..2048776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI197_RS09580 - 2037975..2038961 (-) 987 WP_029325950.1 ABC transporter ATP-binding protein -
  BI197_RS09585 - 2039135..2039920 (-) 786 WP_012117278.1 DUF2268 domain-containing protein -
  BI197_RS09590 fabF 2040004..2041242 (-) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  BI197_RS09595 - 2041265..2042203 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  BI197_RS09600 - 2042371..2042589 (+) 219 WP_003155059.1 hypothetical protein -
  BI197_RS09605 comZ 2042619..2042810 (-) 192 WP_003155061.1 ComZ family protein Regulator
  BI197_RS09610 med 2042823..2043776 (-) 954 WP_070081621.1 BMP family ABC transporter substrate-binding protein Regulator
  BI197_RS09615 - 2043866..2044432 (-) 567 WP_071391998.1 hypothetical protein -
  BI197_RS09620 - 2044515..2045249 (-) 735 WP_070081619.1 hypothetical protein -
  BI197_RS09625 - 2045510..2045695 (+) 186 WP_032874447.1 YjzD family protein -
  BI197_RS09630 - 2045732..2045911 (-) 180 WP_003155070.1 YjzC family protein -
  BI197_RS09635 argF 2045987..2046958 (-) 972 WP_071391999.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35315.92 Da        Isoelectric Point: 4.5594

>NTDB_id=202453 BI197_RS09610 WP_070081621.1 2042823..2043776(-) (med) [Bacillus velezensis strain SYBC H47]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=202453 BI197_RS09610 WP_070081621.1 2042823..2043776(-) (med) [Bacillus velezensis strain SYBC H47]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTAGGTGTCATCGCCTCCTTTCTGTGGCAG
CCAGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTATGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785

Multiple sequence alignment