Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CGP83_RS06195 Genome accession   NZ_CP022717
Coordinates   1223895..1224767 (+) Length   290 a.a.
NCBI ID   WP_047213389.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 27     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1218895..1229767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP83_RS06170 (CGP83_01133) - 1219040..1219807 (+) 768 WP_000176391.1 ribonuclease HII -
  CGP83_RS06175 (CGP83_01134) sucC 1219916..1221082 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  CGP83_RS06180 (CGP83_01135) sucD 1221104..1222012 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  CGP83_RS14785 - 1222239..1222294 (+) 56 Protein_1167 YSIRK-type signal peptide-containing protein -
  CGP83_RS06185 (CGP83_01136) - 1222299..1222451 (+) 153 Protein_1168 cell wall hydrolase -
  CGP83_RS06190 (CGP83_01137) fmhC 1222479..1223723 (+) 1245 WP_000672857.1 FemA/FemB family glycyltransferase FmhC -
  CGP83_RS06195 (CGP83_01138) dprA 1223895..1224767 (+) 873 WP_047213389.1 DNA-processing protein DprA Machinery gene
  CGP83_RS06200 (CGP83_01139) topA 1224941..1227016 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  CGP83_RS06205 (CGP83_01140) trmFO 1227172..1228479 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33558.00 Da        Isoelectric Point: 9.6077

>NTDB_id=202453 CGP83_RS06195 WP_047213389.1 1223895..1224767(+) (dprA) [Staphylococcus aureus strain 27]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYHLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=202453 CGP83_RS06195 WP_047213389.1 1223895..1224767(+) (dprA) [Staphylococcus aureus strain 27]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACCATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.621

100

0.986
  dprA Staphylococcus aureus N315

98.276

100

0.983

Multiple sequence alignment