Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LBS_RS05440 Genome accession   NZ_CP022709
Coordinates   1035141..1035815 (+) Length   224 a.a.
NCBI ID   WP_016265494.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030141..1040815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS05420 (LBS_05420) - 1030475..1031215 (-) 741 WP_035145739.1 MBL fold metallo-hydrolase -
  LBS_RS05425 (LBS_05425) - 1031345..1032130 (-) 786 WP_016265492.1 DUF975 family protein -
  LBS_RS05430 (LBS_05430) - 1032148..1034247 (-) 2100 WP_061827276.1 ABC transporter permease -
  LBS_RS05435 (LBS_05435) - 1034225..1035001 (-) 777 WP_011375145.1 ABC transporter ATP-binding protein -
  LBS_RS05440 (LBS_05440) braR 1035141..1035815 (+) 675 WP_016265494.1 response regulator transcription factor Regulator
  LBS_RS05445 (LBS_05445) - 1035825..1036892 (+) 1068 WP_016265495.1 HAMP domain-containing histidine kinase -
  LBS_RS05450 (LBS_05450) - 1037002..1038168 (+) 1167 WP_035145749.1 hypothetical protein -
  LBS_RS05455 (LBS_05455) - 1038202..1039497 (-) 1296 WP_016265497.1 PTS sugar transporter subunit IIC -
  LBS_RS05460 (LBS_05460) nrdG 1039744..1040325 (-) 582 WP_016265498.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26000.98 Da        Isoelectric Point: 4.8372

>NTDB_id=202332 LBS_RS05440 WP_016265494.1 1035141..1035815(+) (braR) [Latilactobacillus sakei strain WiKim0063]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIHDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=202332 LBS_RS05440 WP_016265494.1 1035141..1035815(+) (braR) [Latilactobacillus sakei strain WiKim0063]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAGAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCACGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCCACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTGTCTAAAGTGCCAATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCGATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGTGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGCCAACACGGTCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTCTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATCCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.575

97.768

0.455
  vicR Streptococcus mutans UA159

34.914

100

0.362