Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LBS_RS05025 Genome accession   NZ_CP022709
Coordinates   945842..946474 (-) Length   210 a.a.
NCBI ID   WP_016265428.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 940842..951474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS04995 (LBS_04995) - 941073..942164 (-) 1092 WP_011375058.1 ABC transporter ATP-binding protein -
  LBS_RS05000 (LBS_05000) - 942320..943315 (+) 996 WP_016265424.1 YhdH/YhfP family quinone oxidoreductase -
  LBS_RS05005 (LBS_05005) - 943370..943588 (-) 219 WP_016265425.1 CsbD family protein -
  LBS_RS05010 (LBS_05010) - 943663..944328 (-) 666 WP_016265426.1 ABC transporter ATP-binding protein -
  LBS_RS05015 (LBS_05015) - 944330..945388 (-) 1059 WP_016265427.1 ABC transporter permease -
  LBS_RS05020 (LBS_05020) - 945523..945816 (-) 294 WP_011375063.1 HesB/YadR/YfhF family protein -
  LBS_RS05025 (LBS_05025) vraR 945842..946474 (-) 633 WP_016265428.1 response regulator transcription factor Regulator
  LBS_RS05030 (LBS_05030) - 946476..947540 (-) 1065 WP_016265429.1 sensor histidine kinase -
  LBS_RS05035 (LBS_05035) liaF 947537..948295 (-) 759 WP_016265430.1 cell wall-active antibiotics response protein LiaF -
  LBS_RS05040 (LBS_05040) greA 948818..949291 (-) 474 WP_011375067.1 transcription elongation factor GreA -
  LBS_RS05045 (LBS_05045) udk 949313..949987 (-) 675 WP_226474417.1 uridine kinase -
  LBS_RS05050 (LBS_05050) mltG 950027..951178 (-) 1152 WP_016265432.1 endolytic transglycosylase MltG -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23359.95 Da        Isoelectric Point: 4.7642

>NTDB_id=202330 LBS_RS05025 WP_016265428.1 945842..946474(-) (vraR) [Latilactobacillus sakei strain WiKim0063]
MIKVLIVDDHEMVRLGISTYLGVQDDLEVVDQAVNGREGVEKALALRPDAILMDLVMPEMDGIEATKTILKAWPQAKIII
LTSFIDDEKVYPAIEAGAASYILKTSTAEEIANTIRKTTAGQSVLEPEVTNKMMNRMTHQAETKLYEDLTNREREVLGLI
AKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKHQLAD

Nucleotide


Download         Length: 633 bp        

>NTDB_id=202330 LBS_RS05025 WP_016265428.1 945842..946474(-) (vraR) [Latilactobacillus sakei strain WiKim0063]
GTGATAAAAGTATTGATTGTAGATGACCACGAGATGGTTCGATTGGGGATTTCAACTTATTTAGGGGTGCAAGACGATTT
AGAAGTGGTCGATCAAGCGGTTAATGGTCGTGAAGGTGTCGAAAAGGCATTGGCACTACGGCCAGATGCGATTTTAATGG
ATCTCGTCATGCCTGAAATGGATGGGATTGAAGCCACTAAGACGATTCTAAAGGCTTGGCCTCAAGCCAAGATTATTATT
CTAACCAGCTTTATTGATGATGAAAAAGTCTACCCAGCAATCGAAGCTGGTGCAGCAAGTTACATATTAAAAACGTCGAC
GGCCGAAGAGATTGCCAACACGATTCGGAAGACAACTGCGGGGCAATCAGTTTTAGAACCTGAAGTCACTAATAAGATGA
TGAATCGTATGACGCATCAGGCAGAAACAAAGTTATACGAAGATTTAACGAACCGTGAACGAGAAGTCCTAGGTTTGATT
GCCAAGGGTCGCAGTAATCAAGAAATTGCGGATGAATTATTCATTACACTTAAAACGGTTAAGACGCATGTTTCCAATAT
TTTAGCGAAGTTACAAGTCGACGATCGGACGCAGGCCGCAATTTATGCCATCAAGCACCAATTAGCGGATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

62.319

98.571

0.614
  degU Bacillus subtilis subsp. subtilis str. 168

36.53

100

0.381