Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   SPG_1854 Genome accession   CP001015
Coordinates   1765949..1766569 (-) Length   206 a.a.
NCBI ID   ACF56239.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760949..1771569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1849 recA 1761326..1762492 (-) 1167 ACF56862.1 recA protein Machinery gene
  SPG_1850 cinA 1762547..1763803 (-) 1257 ACF56549.1 colligrin Machinery gene
  SPG_1851 - 1763888..1764904 (-) 1017 ACF55784.1 transcriptional regulator, putative -
  SPG_1852 - 1764912..1765430 (-) 519 ACF55312.1 acetyltransferase, GNAT family protein -
  SPG_1853 - 1765420..1765863 (-) 444 ACF54990.1 conserved hypothetical protein -
  SPG_1854 comM 1765949..1766569 (-) 621 ACF56239.1 hypothetical protein Regulator
  SPG_1855 - 1766952..1767815 (-) 864 ACF56008.1 transcriptional activator, putative -
  SPG_1856 - 1768487..1768783 (+) 297 ACF56011.1 hypothetical protein -
  SPG_1857 - 1768886..1770901 (+) 2016 ACF55923.1 conserved hypothetical protein -
  SPG_1858 - 1770903..1771535 (+) 633 ACF56378.1 ABC transporter, ATP-binding protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23540.66 Da        Isoelectric Point: 10.1254

>NTDB_id=20225 SPG_1854 ACF56239.1 1765949..1766569(-) (comM) [Streptococcus pneumoniae G54]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTRKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYTGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=20225 SPG_1854 ACF56239.1 1765949..1766569(-) (comM) [Streptococcus pneumoniae G54]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCCTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCCGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATACTGGACTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

99.515

100

0.995
  comM Streptococcus pneumoniae R6

99.515

100

0.995
  comM Streptococcus pneumoniae TIGR4

99.515

100

0.995
  comM Streptococcus mitis NCTC 12261

38.462

94.66

0.364
  comM Streptococcus mitis SK321

38.462

94.66

0.364

Multiple sequence alignment