Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LC20001_RS00040 Genome accession   NZ_CP017713
Coordinates   9934..10488 (+) Length   184 a.a.
NCBI ID   WP_003680798.1    Uniprot ID   -
Organism   Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4934..15488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC20001_RS00030 (LC20001_00030) gyrA 6710..9271 (+) 2562 WP_003677393.1 DNA gyrase subunit A -
  LC20001_RS00035 (LC20001_00035) rpsF 9595..9894 (+) 300 WP_003680796.1 30S ribosomal protein S6 -
  LC20001_RS00040 (LC20001_00040) ssb 9934..10488 (+) 555 WP_003680798.1 single-stranded DNA-binding protein Machinery gene
  LC20001_RS00045 (LC20001_00045) rpsR 10518..10763 (+) 246 WP_003680800.1 30S ribosomal protein S18 -
  LC20001_RS00050 (LC20001_00050) - 10899..11342 (-) 444 WP_169925042.1 site-specific integrase -
  LC20001_RS14480 - 11596..12141 (+) 546 WP_280522752.1 IS3 family transposase -
  LC20001_RS14650 - 12583..12708 (+) 126 WP_257882940.1 hypothetical protein -
  LC20001_RS00065 (LC20001_00060) - 12868..14880 (+) 2013 WP_010010464.1 DHH family phosphoesterase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19923.37 Da        Isoelectric Point: 4.7657

>NTDB_id=202156 LC20001_RS00040 WP_003680798.1 9934..10488(+) (ssb) [Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001]
MINRVVLIGRLTRDTELRYTSGGAAVASFTLAVNRQFTNRNGEREADFINCVMWRKSAENFTNFTHKGSLVGIEGRIQTR
NYDNAEGQRVYVTEVVADNFSLLESRSADEHRQSTGGGQSSGGYNNNNQSNGFSSSNNAFNSAPQSTTNPAPSNGPASSA
NSNPNDPFANNGESIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=202156 LC20001_RS00040 WP_003680798.1 9934..10488(+) (ssb) [Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001]
ATGATCAATCGAGTAGTCCTAATTGGACGTTTGACCCGGGATACTGAATTACGTTATACCAGTGGTGGTGCAGCAGTTGC
TTCATTCACTTTAGCAGTTAATCGCCAGTTCACTAACCGTAATGGGGAACGTGAAGCTGACTTTATCAACTGTGTGATGT
GGCGTAAATCAGCCGAGAACTTTACTAATTTTACCCATAAAGGATCATTAGTAGGGATCGAAGGTCGGATTCAAACACGG
AATTATGACAACGCTGAAGGTCAACGTGTTTACGTGACTGAAGTTGTTGCCGATAACTTCTCATTGTTAGAATCACGTTC
TGCTGACGAACATCGTCAAAGTACTGGCGGTGGCCAAAGTTCTGGTGGTTATAACAATAATAATCAGTCTAACGGCTTTA
GCAGCAGTAACAACGCATTCAACTCAGCTCCTCAATCAACAACTAATCCGGCTCCTAGCAATGGTCCTGCCAGCAGCGCA
AATAGCAATCCGAATGATCCATTTGCAAATAATGGTGAATCGATTGATATTTCCGATGATGACTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.391

100

0.674
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.804

100

0.538

Multiple sequence alignment