Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BKX93_RS00930 Genome accession   NZ_CP017707
Coordinates   201961..202755 (+) Length   264 a.a.
NCBI ID   WP_046155797.1    Uniprot ID   -
Organism   Chromobacterium vaccinii strain 21-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 196961..207755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKX93_RS00900 (BKX93_00900) - 197007..197756 (-) 750 WP_070978198.1 metallophosphoesterase -
  BKX93_RS00905 (BKX93_00905) - 197781..198434 (-) 654 WP_046166510.1 HD domain-containing protein -
  BKX93_RS00910 (BKX93_00910) - 198576..199424 (-) 849 WP_046166511.1 GNAT family N-acetyltransferase -
  BKX93_RS00915 (BKX93_00915) - 199421..200032 (-) 612 WP_046155794.1 AraC family transcriptional regulator -
  BKX93_RS00920 (BKX93_00920) pgeF 200138..200875 (-) 738 WP_046166512.1 peptidoglycan editing factor PgeF -
  BKX93_RS00925 (BKX93_00925) rluD 200865..201890 (-) 1026 Protein_190 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BKX93_RS00930 (BKX93_00930) comL 201961..202755 (+) 795 WP_046155797.1 outer membrane protein assembly factor BamD Machinery gene
  BKX93_RS00935 (BKX93_00935) - 202822..203853 (-) 1032 WP_070978199.1 nitronate monooxygenase -
  BKX93_RS00940 (BKX93_00940) - 203933..204124 (+) 192 WP_052717308.1 hypothetical protein -
  BKX93_RS00945 (BKX93_00945) rpsB 204285..205013 (+) 729 WP_021477860.1 30S ribosomal protein S2 -
  BKX93_RS00950 (BKX93_00950) tsf 205087..205953 (+) 867 WP_046155799.1 translation elongation factor Ts -
  BKX93_RS00955 (BKX93_00955) pyrH 206044..206763 (+) 720 WP_046155800.1 UMP kinase -
  BKX93_RS00960 (BKX93_00960) frr 206839..207396 (+) 558 WP_046155858.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30413.56 Da        Isoelectric Point: 8.4963

>NTDB_id=202128 BKX93_RS00930 WP_046155797.1 201961..202755(+) (comL) [Chromobacterium vaccinii strain 21-1]
MKRYVVAAMLVMVGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHY
KDGEPELAIASADRFIKLHPTHPNIDYIYYLKGLVYYNDDSGLLAKWAGQDMSERDPRAAREAFSAFRELTTRFPNSTYA
PDAKAKMIRLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYSNTKYPEEALAIMVSAYDKLQLPKLRDDARRVLAL
NYPQSQYLNKSWTVEEMPWWKLWK

Nucleotide


Download         Length: 795 bp        

>NTDB_id=202128 BKX93_RS00930 WP_046155797.1 201961..202755(+) (comL) [Chromobacterium vaccinii strain 21-1]
ATGAAAAGATACGTTGTTGCAGCTATGTTGGTGATGGTGGGGCTTGCCGGGTGTGCAACCACGGAAACCTACGACGAAAC
GCGCGGTTGGACCGTGGAGAAGCTCTATTCGGAAGCTCACGATGAGTTGAACAGCGGTAATTATACTCGCGCAGTCAAGC
TGTATGAAACGCTGGAAGCGCGCTTTCCATACGGACGCTACGCGCAGCAGGCTCAGATGGACCTGGCCTACACCCATTAC
AAGGACGGCGAGCCCGAGCTGGCCATCGCCTCCGCCGATCGCTTCATCAAGCTGCATCCTACACATCCGAACATCGACTA
CATCTATTATCTGAAGGGCTTGGTGTATTACAACGATGATTCCGGCCTGCTCGCCAAATGGGCTGGCCAGGACATGAGCG
AGCGCGATCCGCGCGCCGCCCGCGAGGCCTTCTCCGCTTTCCGCGAGCTGACCACCCGTTTCCCCAACAGCACCTACGCG
CCGGACGCCAAGGCGAAGATGATCCGCCTGGTGGACGCGCTGGGAGGCAACGAGATGCACGTGGCGCGCTACTACATGAA
ACGCGGCGCCTATTTGGCCGCTGCCAACCGCGCCCAGGGCGTGGTCAAGGACTACTCCAACACCAAGTATCCGGAAGAGG
CGCTGGCCATCATGGTGTCCGCCTACGACAAGCTGCAGTTGCCGAAGCTGCGGGACGACGCGCGCCGCGTGCTGGCGCTC
AACTATCCGCAGAGCCAGTACCTGAACAAGTCGTGGACGGTCGAAGAGATGCCGTGGTGGAAGCTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(32-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.427

100

0.591
  comL Neisseria gonorrhoeae MS11

57.303

100

0.58

Multiple sequence alignment