Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LC20004_RS00270 | Genome accession | NZ_CP017697 |
| Coordinates | 62034..62570 (+) | Length | 178 a.a. |
| NCBI ID | WP_010014346.1 | Uniprot ID | A0A2D1KJZ8 |
| Organism | Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM 20004 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 57034..67570
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LC20004_RS00260 (LC20004_00250) | gyrA | 58810..61371 (+) | 2562 | WP_003677393.1 | DNA gyrase subunit A | - |
| LC20004_RS00265 (LC20004_00255) | rpsF | 61695..61994 (+) | 300 | WP_003680796.1 | 30S ribosomal protein S6 | - |
| LC20004_RS00270 (LC20004_00260) | ssb | 62034..62570 (+) | 537 | WP_010014346.1 | single-stranded DNA-binding protein | Machinery gene |
| LC20004_RS00275 (LC20004_00265) | rpsR | 62600..62845 (+) | 246 | WP_003680800.1 | 30S ribosomal protein S18 | - |
| LC20004_RS00280 (LC20004_00270) | - | 63031..63483 (+) | 453 | WP_191981881.1 | hypothetical protein | - |
| LC20004_RS00285 (LC20004_00275) | - | 63897..65909 (+) | 2013 | WP_010014349.1 | DHH family phosphoesterase | - |
| LC20004_RS00290 (LC20004_00280) | rplI | 65973..66425 (+) | 453 | WP_003680229.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19446.93 Da Isoelectric Point: 4.7657
>NTDB_id=201924 LC20004_RS00270 WP_010014346.1 62034..62570(+) (ssb) [Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM 20004]
MINRVVLIGRLTRDAELRYTSGGAAVASFTLAVNRQFTNRNGEREADFINCVMWRKSAENFTNFTHKGSLVGIEGRIQTR
NYDNAEGQRVYVTEVVADNFSLLESRSADEHRQSTGGYNNNNQSNGFSSSNNAFNSAPQSTTNPAPNNGPASSANSNPND
PFANNGESIDISDDDLPF
MINRVVLIGRLTRDAELRYTSGGAAVASFTLAVNRQFTNRNGEREADFINCVMWRKSAENFTNFTHKGSLVGIEGRIQTR
NYDNAEGQRVYVTEVVADNFSLLESRSADEHRQSTGGYNNNNQSNGFSSSNNAFNSAPQSTTNPAPNNGPASSANSNPND
PFANNGESIDISDDDLPF
Nucleotide
Download Length: 537 bp
>NTDB_id=201924 LC20004_RS00270 WP_010014346.1 62034..62570(+) (ssb) [Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM 20004]
ATGATCAATCGAGTAGTCCTAATTGGACGTTTGACCCGGGATGCTGAATTACGTTATACCAGTGGTGGTGCTGCAGTTGC
TTCATTCACTTTAGCAGTTAATCGCCAGTTCACTAACCGTAATGGAGAACGTGAAGCTGACTTTATCAACTGTGTGATGT
GGCGTAAATCAGCCGAGAACTTTACTAATTTTACCCATAAAGGATCATTAGTAGGGATCGAAGGTCGGATTCAAACACGG
AATTATGACAACGCTGAAGGTCAACGTGTTTACGTGACTGAAGTTGTTGCCGATAACTTCTCATTGTTAGAATCACGTTC
TGCTGACGAACATCGTCAAAGTACTGGCGGTTATAACAATAATAATCAGTCTAATGGCTTTAGTAGCAGTAACAACGCAT
TCAACTCAGCTCCTCAATCAACAACTAATCCAGCTCCTAACAATGGTCCTGCTAGCAGCGCAAATAGCAATCCGAATGAT
CCATTTGCAAATAATGGTGAATCGATTGATATTTCCGATGATGACTTACCATTCTAG
ATGATCAATCGAGTAGTCCTAATTGGACGTTTGACCCGGGATGCTGAATTACGTTATACCAGTGGTGGTGCTGCAGTTGC
TTCATTCACTTTAGCAGTTAATCGCCAGTTCACTAACCGTAATGGAGAACGTGAAGCTGACTTTATCAACTGTGTGATGT
GGCGTAAATCAGCCGAGAACTTTACTAATTTTACCCATAAAGGATCATTAGTAGGGATCGAAGGTCGGATTCAAACACGG
AATTATGACAACGCTGAAGGTCAACGTGTTTACGTGACTGAAGTTGTTGCCGATAACTTCTCATTGTTAGAATCACGTTC
TGCTGACGAACATCGTCAAAGTACTGGCGGTTATAACAATAATAATCAGTCTAATGGCTTTAGTAGCAGTAACAACGCAT
TCAACTCAGCTCCTCAATCAACAACTAATCCAGCTCCTAACAATGGTCCTGCTAGCAGCGCAAATAGCAATCCGAATGAT
CCATTTGCAAATAATGGTGAATCGATTGATATTTCCGATGATGACTTACCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.778 |
100 |
0.685 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.18 |
100 |
0.562 |