Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GD3902_RS15120 Genome accession   NZ_CP017694
Coordinates   2956622..2958343 (+) Length   573 a.a.
NCBI ID   WP_008879799.1    Uniprot ID   A0A0Q0UZZ6
Organism   Geobacillus thermodenitrificans strain KCTC3902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2951622..2963343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD3902_RS15095 (GD3902_14800) - 2951810..2952040 (+) 231 WP_008879804.1 exodeoxyribonuclease VII small subunit -
  GD3902_RS15100 (GD3902_14805) - 2952044..2952937 (+) 894 WP_008879803.1 polyprenyl synthetase family protein -
  GD3902_RS15105 (GD3902_14810) dxs 2953202..2955094 (+) 1893 WP_011887782.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GD3902_RS15110 (GD3902_14815) - 2955100..2955945 (+) 846 WP_029761060.1 TlyA family RNA methyltransferase -
  GD3902_RS15115 (GD3902_14820) ahrC 2956029..2956478 (+) 450 WP_008879800.1 transcriptional regulator AhrC/ArgR -
  GD3902_RS15120 (GD3902_14825) recN 2956622..2958343 (+) 1722 WP_008879799.1 DNA repair protein RecN Machinery gene
  GD3902_RS15125 (GD3902_14830) spoIVB 2958571..2959866 (+) 1296 WP_011887780.1 SpoIVB peptidase -
  GD3902_RS15135 (GD3902_14835) spo0A 2960104..2960937 (+) 834 WP_087960146.1 sporulation transcription factor Spo0A -
  GD3902_RS15140 (GD3902_14840) - 2961069..2961488 (-) 420 WP_029761059.1 hypothetical protein -
  GD3902_RS15145 (GD3902_14845) - 2961629..2961781 (-) 153 WP_078172643.1 YycC family protein -
  GD3902_RS15150 (GD3902_14850) - 2961890..2962624 (+) 735 WP_011887777.1 glycerophosphodiester phosphodiesterase -
  GD3902_RS15155 (GD3902_14855) - 2962628..2962876 (-) 249 WP_008879793.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 63999.33 Da        Isoelectric Point: 4.7872

>NTDB_id=201908 GD3902_RS15120 WP_008879799.1 2956622..2958343(+) (recN) [Geobacillus thermodenitrificans strain KCTC3902]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCCQK
CAEVGIDVSEGMVVLRRDILANGKSVCRINGKLVTTAILREVGATLVDIHGQHEHQELMDPSRHLPLLDEFGGAEMAEAL
ARYRAVYEQHEALVKKLKKLSENEQQMAHRLDLLTFQLREIEQATLELGEDERLMEEKVRIVNFQKIYSAIQKSYEALSG
EGRGLDSIGEAMGHLDDVAAMDAALKEAYETVANSYYLLEEVMYKLRDQLEELEYDPARLDAIESRLAEIQQLKRKYGAT
IADILQYAEAIAEEIETIENRETHVHELERQLAAVTSDLLMEAENVTNVRRTYARELIERIHQELKDLYMEKTQFDIIFA
KREGPLDAPLVDGVPVKFHEDGIDVVEFYISTNVGEPLKPLAKVASGGELSRIMLALKTIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYRIASGSQVLCISHLPQVAAMADTHLFIAKETDGTRTKTVVKKLDEEEKVKEIGRMISGVEMTELTKQH
AKELLELAAKMKQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=201908 GD3902_RS15120 WP_008879799.1 2956622..2958343(+) (recN) [Geobacillus thermodenitrificans strain KCTC3902]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCGATCATTGAATCGCTATCTTTGTCCTTTGACAAAGGACTGACAGTGTT
AACCGGCGAAACAGGGGCTGGTAAATCGATCATCATTGATGCGATTCATCTATTGATCGGCGGGCGCGGTTCCGCCGAAT
TTGTCCGTTTCGGCGCGGAAAAGGCAGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCACCCATGTTGCCAAAAG
TGCGCTGAGGTCGGCATCGATGTGAGCGAAGGAATGGTCGTTTTGCGCCGCGACATTTTGGCTAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTGGTGACAACCGCCATATTGCGGGAAGTTGGAGCGACGCTTGTCGATATTCACGGTCAGCATG
AACATCAAGAGCTGATGGATCCATCGCGTCATTTACCGCTTCTTGATGAATTCGGCGGTGCGGAGATGGCGGAGGCGCTC
GCACGCTACCGCGCTGTCTATGAACAGCATGAAGCGTTGGTGAAAAAATTAAAAAAGCTGAGTGAAAATGAACAGCAAAT
GGCGCATCGACTTGATTTATTGACATTTCAGCTGCGCGAAATCGAACAGGCCACACTCGAGCTCGGAGAAGACGAACGGC
TGATGGAAGAAAAAGTGCGCATTGTCAACTTTCAAAAGATATACAGTGCCATCCAAAAAAGCTATGAAGCGCTCTCCGGT
GAAGGACGCGGCCTTGATTCGATCGGGGAAGCGATGGGCCACCTCGATGATGTCGCCGCGATGGATGCTGCGCTGAAGGA
GGCGTACGAAACAGTTGCCAACAGCTACTATTTGCTTGAAGAAGTGATGTACAAGCTGCGCGACCAGCTCGAGGAGCTTG
AGTATGACCCGGCGCGGCTTGACGCCATCGAAAGCCGCCTCGCTGAAATCCAGCAGTTAAAACGAAAATACGGCGCAACG
ATCGCTGATATTTTGCAATATGCTGAGGCGATTGCTGAGGAAATCGAGACGATTGAAAACCGTGAGACCCATGTGCATGA
ACTTGAGCGGCAGCTCGCAGCAGTGACAAGCGATTTGCTGATGGAGGCGGAAAACGTGACCAACGTTCGCCGCACTTACG
CCCGGGAGCTGATTGAACGCATTCACCAAGAGTTAAAAGATTTGTACATGGAGAAGACGCAGTTTGACATCATCTTTGCG
AAACGTGAAGGACCACTCGATGCTCCATTGGTTGATGGCGTGCCGGTTAAGTTTCACGAAGATGGCATCGACGTCGTTGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTGAAACCGCTCGCTAAAGTTGCTTCGGGCGGTGAATTGTCACGGATTA
TGTTAGCGTTGAAAACGATTTTTTCCAAACATCAAGGGGTGACGTCGATTATTTTCGACGAGGTGGATACAGGCGTCAGC
GGTCGTGTTGCCCAAGCGATCGCCGAAAAAATTTACCGCATTGCCAGCGGTTCACAAGTGCTTTGCATTTCTCACCTGCC
GCAAGTGGCTGCCATGGCGGACACGCATTTATTCATCGCCAAAGAAACGGACGGAACGCGGACGAAAACAGTGGTGAAAA
AGTTGGATGAGGAGGAGAAGGTGAAAGAAATCGGGCGAATGATTTCCGGCGTCGAAATGACGGAGTTGACAAAACAGCAT
GCCAAAGAACTGTTAGAACTGGCGGCCAAAATGAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0UZZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.718

100

0.628

Multiple sequence alignment