Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SSU05_0755 Genome accession   CP000407
Coordinates   739784..743467 (+) Length   1227 a.a.
NCBI ID   ABP89721.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 734784..748467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0754 rexB 736551..739817 (+) 3267 ABP89720.1 ATP-dependent nuclease, subunit B Machinery gene
  SSU05_0755 rexA 739784..743467 (+) 3684 ABP89721.1 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) Machinery gene
  SSU05_0756 - 743589..744257 (-) 669 ABP89722.1 Predicted membrane protein -
  SSU05_0757 - 744376..745101 (+) 726 ABP89723.1 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit -
  SSU05_0758 - 745155..746318 (+) 1164 ABP89724.1 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit -
  SSU05_0759 - 746348..747160 (+) 813 ABP89725.1 ABC-type phosphate transport system, ATPase component -
  SSU05_0760 - 747329..747565 (+) 237 ABP89726.1 Protein involved in cell division -
  SSU05_0761 - 747537..747947 (+) 411 ABP89727.1 Protein involved in cell division -

Sequence

Protein


Download         Length: 1227 a.a.        Molecular weight: 140943.41 Da        Isoelectric Point: 5.0645

>NTDB_id=20154 SSU05_0755 ABP89721.1 739784..743467(+) (rexA) [Streptococcus suis 05ZYH33]
MDGTNERRSGLMAFEQFLSAEEIKAVQLAEAHSDKQQKRTAEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGI
GIDQLFISTFTVKAAGELKERIEKKLNETIAETTDMELRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRI
LQDETEKASLKKEVFDQLFADYLEEDENGAFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYS
QERIEQMLEQGFKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSR
GKGLTNANRPKDEHLIAFKEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKEAA
FEFGDIGHFAIRILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEK
FELYQANPQSGKLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQDSA
NSSTDAEEETPLTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIM
LDTLRVINNPLNDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENW
RAYAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEF
LPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNL
QELKIANLSEQMRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFK
KVFVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQE
GMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVRAALEAVHAEQAIKDKINVQMILDFFDT
DLGREILANTDKLHREAPFASLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALK
KAYKIDRVDCHLILLGGERIEVVEVNI

Nucleotide


Download         Length: 3684 bp        

>NTDB_id=20154 SSU05_0755 ABP89721.1 739784..743467(+) (rexA) [Streptococcus suis 05ZYH33]
TTGGATGGAACGAATGAAAGGAGGTCAGGACTAATGGCTTTTGAACAATTTTTAAGCGCGGAAGAAATCAAGGCTGTGCA
GCTGGCGGAAGCCCATTCTGATAAGCAGCAAAAACGCACAGCTGAGCAGATTGAAGCTATCTACACGCACGGTCAGAATG
TTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGACTTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTATA
GGGATTGACCAGCTCTTTATCTCGACCTTTACAGTCAAGGCGGCTGGTGAATTGAAGGAGCGGATTGAGAAAAAGCTCAA
TGAAACTATTGCGGAGACGACCGATATGGAATTGCGTCGGCATTTGTCGGCCCAGTTGGCAGATTTGACTAAGGCGGATA
TTGGGACCATGGACTCCTTTACGCAGAAATTGGTGACCACCTATGGTTATAGCCTTGGTATTTCTCCGCAGTTTCGGATT
TTACAGGATGAGACTGAAAAAGCGAGTCTGAAAAAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAAGAGGATGA
AAATGGTGCATTCCGCAAACTGGTTCGCAATTTTTCGGGCAACCGCAAGGATAATAGTGGTTTCCGTCAGGTTGTTTATC
AGGTGCATGATTTTAGCCAATCGACGAGCAGTCCAACTAAATGGCTGAAAGAACAGGCTGTTCAAGCTGATTTGTACAGT
CAAGAGCGTATAGAGCAGATGCTAGAGCAAGGCTTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGCAGATTTCTT
CCGCTACCATGTGGAATGGGGCAGAAATGACTTTGGGTCTGCTAAATATTTTGCAAATGTGGAAGAAGTCTTGGATTTGT
TGACAGGTTTAGATAGTCTGGACCAGAAGGACTTGATGGAACGGGTTGAAAGAATTCTTCTCATCAATAATCAGTCCAGA
GGCAAGGGCCTGACCAATGCCAATCGACCAAAAGATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGTAAGAG
CCAGATTATCTCAGAACTACGAGATTTGGGTCAGGAAGTTTATGAATTGACCCTGCTGAAAGACTATCAGGTTCAAGCTT
TGCCACTACTGATATTATTACGTGACTTTGTCTTGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCC
TTTGAATTTGGCGACATTGGGCATTTCGCTATTCGTATTTTAGAAGAAAATGCGGACATTCGCCAGTTTTTCCAAGAGAA
ATATCACGAAGTCATGGTGGACGAGTACCAGGATAACAACCATAGCCAAGAGCGAATGCTGGACCTGCTGTCTAACGGTC
ACAACCGCTTTATGGTGGGTGATATTAAGCAGTCCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAAGAGAAA
TTTGAACTGTATCAGGCAAATCCTCAGTCTGGGAAATTGATTTTGCTCAAGGAAAATTTCCGTAGTCAGATTGAAGTCTT
GGAGGCAACAAATGCTATTTTCACGCGCCTGATGGACCGTCAAGTAGGGGAAATCAAGTATGACGACACCCACAGTCTAG
TGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGCCCAAGAATGAGATGGAATACTTGATTTACGATCAGCAGGATAGCGCA
AACTCTTCAACAGATGCTGAGGAAGAAACACCTCTGACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCT
TCACAATGAAGAAGGAGCAGACTTCAAGGACATCACTCTCTTGGTACAAAAGCGGACGCACAATGACCTCATTATGTCCA
TTTTTGAAAAACATGGGATTCCAATTGTGGCAGATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATCATG
CTGGATACCTTGCGGGTTATCAATAATCCACTCAATGACTATGCCTTGGTTGCCCTGCTTAAATCACCTATGTTCCGATT
CGATGAAGATGAACTGACACGGATTTCCTTGCAGGCCGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCAGCAAG
CAAGTGGGCAACATCCTGAACTGATGTCAGAAAAGTTGAAGAAGAAAATCACGGATTTCTTGTCTATTTTGGAAAATTGG
CGTGCCTATGCCAAACTGCATTCTATTTATGACATGATTTGGAAGATGTTCAATGAAAAATTCTACTATGACTATGTCGG
TGCGCTTCCAAATGGCAGCAAGCGTCAGGCCAATCTATACGCACTTGGTCTGCGTGCCAACCAGTTTGAAAAAACAGGCT
ACAAGGGATTGTCTCGCTTCATCGCCATGATTGATCGTGCCTTAGCAAATGACAAGGACTTGGCAGATGTACAAGAGTTT
CTACCGCAAAATGCTGTACAGCTTATGACTATTCACAAGTCAAAAGGTTTGGAGTTCAAGTATGTCTTCCTCATGAACAT
CGATAAGCGATTTAACTTGGAAGACCATTACCAATCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAG
CAGATATGAAAGATAAGGTAAATAGCCCATTACCTCAGGTGCGAGTCTTAATGAACACCCTCCCTTATCAAAATAATCTC
CAAGAGCTAAAAATTGCCAATCTTTCGGAACAAATGCGGTTGCTTTATGTTGCACTAACACGTGCTGAGAAGAAGCTGTA
TCTGGTTGGAAAGGGTAATGCTGACAAGTTAGCTGAAAAATACGATGGCAAAAAGGAAAATGGCGTACTAGCCCAATCAA
CTCGTGAAAGTATGGCGACCTTCCAAGACTGGATTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGACTTGCACTTCAAG
AAAGTCTTTGTGACGGATGAGGATTTGACAGAGGAGAAGATTGGTAAACTTACATTGAAGAGTAAGCTAGAAGACGCCAG
CCTTAAAGATATTCGTCAATCAGAAGACATCGCCCAGGCCTTGGACCAGTTGTCTTCTGTCCAAGAGTTGAACGAACGCT
ATAAGGCTGCTATAGAATTGCCAAGTTTACGGACTCCAAGTCAAATCAAGAAGCTCTATGAGCCTATTTTGGAACAAGAA
GGCATGGAAGTTATGGAAAAATACCAGCCCAAACGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCAAAAATCACTGG
AGCCCAAGTCGGTTCAGCAGTGCATGAACTCATGCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAG
CAGCCCTAGAAGCTGTTCATGCTGAGCAAGCGATTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACA
GACTTAGGAAGAGAAATTCTAGCCAATACGGACAAACTCCACCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATTCTGT
ATCTCAGGAAAACTTTGTCCTTCGTGGGATTATCGATGGCTACCTACTGTATGATGATCATATTGTCCTCTTTGATTACA
AGACAGACAAATATGACCAACCAATCCAACTCAGCCAACGTTACCAAGCTCAAATGCAACTCTATGCGGAGGCATTGAAA
AAAGCCTACAAGATAGATCGTGTAGACTGCCATTTGATTTTGCTTGGTGGGGAGAGAATAGAAGTGGTCGAAGTCAACAT
ATAG

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(40-482)

UvrD-like helicase C-terminal domain (UvrD_C)

(494-908)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1048-1203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.085

99.674

0.519

Multiple sequence alignment