Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   CGL27_RS18610 Genome accession   NZ_CP022545
Coordinates   4501518..4503761 (-) Length   747 a.a.
NCBI ID   WP_119988602.1    Uniprot ID   -
Organism   Streptomyces sp. 11-1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4496518..4508761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGL27_RS18595 (CGL27_18310) - 4496828..4497055 (+) 228 WP_119988596.1 heavy-metal-associated domain-containing protein -
  CGL27_RS18600 (CGL27_18315) - 4497144..4499444 (+) 2301 WP_119988599.1 heavy metal translocating P-type ATPase -
  CGL27_RS18605 (CGL27_18320) - 4500077..4501366 (-) 1290 WP_078641523.1 citrate synthase -
  CGL27_RS18610 (CGL27_18325) recD/recD2/recDB 4501518..4503761 (-) 2244 WP_119988602.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CGL27_RS18615 (CGL27_18330) - 4503959..4504975 (+) 1017 WP_119988605.1 LacI family DNA-binding transcriptional regulator -
  CGL27_RS18620 (CGL27_18335) - 4504972..4506540 (+) 1569 WP_119988608.1 sugar ABC transporter ATP-binding protein -
  CGL27_RS18625 (CGL27_18340) - 4506530..4508473 (+) 1944 WP_119988611.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 80741.15 Da        Isoelectric Point: 6.2703

>NTDB_id=201506 CGL27_RS18610 WP_119988602.1 4501518..4503761(-) (recD/recD2/recDB) [Streptomyces sp. 11-1-2]
MLKLAVVEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYQTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGVDTLDVIEERPERLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVVKNEPYRLAADVWGIGFLTADKIAQSVGIPHDSPDRVKAGLQYALSQSADQGHCYLPEEQL
IADAVKLLQVDTGLVIDCLGELAAEDEGVVREPVPGPADGEPVSAVYLVPFHRAEISLAGQVLRLLRTQEDRLPAFGDVD
WDKALDWLASRTGADLAPEQSQAVRLALTEKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELRPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSVGAGEVLRDLLAP
GSPVPAVRLTRIFRQAQQSGVVTNAHRINEGVPPVTQGLSDFFLFVEDDTEEAGRLTVDVAARRIPAKFGLDPRRDVQVL
APMHRGPAGAGTLNGLLQQAITPARPDLPERRLGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTSLDTDEQRLTVRT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTVS
AGRRCTALDHRLGGDVTVERVKRVSER

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=201506 CGL27_RS18610 WP_119988602.1 4501518..4503761(-) (recD/recD2/recDB) [Streptomyces sp. 11-1-2]
ATGCTCAAACTCGCGGTGGTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAATGAGGAGAACGGCTATACGGTCGCGCG
GGTCGACACCGGCCGGGGCTCCGGCGATCTGCTGACCGTCGTCGGCTCGCTGCTGGGCGCCCAGCCGGGCGAGTCACTGC
GGATGGAGGGCCGCTGGGGTTCCCATCCGCAATATGGCAAACAGTTCACCGTCGAGAACTACCAGACCGTCCTCCCCGCC
ACCGTCCAGGGCATCCGGCGCTATCTCGGCTCGGGGCTGATCAAGGGCATCGGCCCCCGGATCGCCGACCGGATCACCGA
GCACTTCGGCGTCGACACCCTCGATGTCATCGAGGAGCGGCCCGAGCGGCTGGTCGAGGTCCCGGGCCTCGGCCCCAAGC
GCACCAAGATGATCGCCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTGATGGTCTTCCTCCAGGGGGTGGGCGTC
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGCGACGCGTCGATTTCGGTCGTGAAGAACGAGCCGTACCGGCT
GGCGGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCGGTGGGCATTCCGCATGACAGCCCCG
ACCGGGTGAAGGCCGGCCTGCAGTACGCGCTGTCCCAGTCCGCCGACCAGGGCCACTGCTATCTCCCCGAGGAGCAACTC
ATCGCGGACGCCGTGAAGTTGCTCCAGGTGGACACCGGTCTGGTCATCGACTGCCTGGGGGAGCTCGCGGCCGAGGACGA
GGGCGTGGTGCGCGAGCCGGTCCCGGGCCCGGCGGACGGCGAGCCGGTATCCGCCGTCTATCTGGTGCCCTTCCACCGCG
CCGAGATCTCCCTCGCCGGCCAGGTGCTGCGGCTGCTGCGCACCCAGGAGGACCGGCTGCCCGCCTTCGGGGACGTGGAC
TGGGACAAGGCGCTGGACTGGCTGGCGAGCCGCACCGGAGCCGATCTGGCGCCCGAGCAGAGCCAGGCGGTGCGGCTCGC
GCTGACCGAGAAGGTCGCGGTGCTCACCGGCGGGCCGGGCTGCGGCAAGTCCTTCACCGTGCGGTCCGTGGTGGAGCTGG
CCCGCGCCAAGAAGGCGAAGGTGGTGCTCGCGGCGCCCACCGGCCGGGCCGCCAAGCGGCTGTCCGAGCTGACCGGCGCC
GAGGCGTCCACCGTCCACCGGCTGCTGGAGCTCAGGCCCGGCGGGGACGCGGCGTATGACAGGGACCGCCCGCTCGACGC
GGATCTGGTGGTGGTCGACGAGGCGTCGATGCTCGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCGGTCCCGCCCGGCG
CCCATCTGCTCTTCGTCGGGGATGTGGACCAGCTGCCCAGCGTGGGCGCCGGGGAGGTGCTGCGCGATCTGCTGGCCCCC
GGCAGCCCCGTCCCGGCGGTGCGGCTGACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGTGTGGTCACCAACGCCCACCG
GATCAACGAGGGGGTGCCGCCGGTCACCCAGGGCCTGTCGGATTTCTTTCTCTTCGTCGAGGACGACACGGAGGAGGCCG
GGCGGCTCACGGTCGATGTCGCGGCCCGCCGCATCCCCGCCAAGTTCGGTCTCGACCCCCGCCGTGACGTGCAGGTTCTG
GCCCCTATGCACCGCGGCCCGGCGGGCGCGGGCACGCTCAACGGACTGCTTCAGCAGGCCATCACCCCGGCCCGCCCGGA
CCTCCCGGAGCGCCGTCTCGGAGGCCGGGTCTTCCGGGTCGGCGACAAGGTGACCCAGATCCGTAACAATTATGAGAAAG
GGGCCAACGGGGTCTTCAACGGCACGGTTGGCGTCGTCACCTCACTCGACACCGATGAGCAGCGGCTGACCGTGCGGACG
GACGAGGACGAGGAGGTACCGTACGACTTCGACGAGCTGGACGAGCTGGCTCATGCCTATGCGGTGACCATCCACCGGTC
ACAGGGCAGTGAGTACCCGGCCGTCGTGATTCCGGTGACCACCGGGGCCTGGATGATGTTGCAGCGCAACCTCCTGTACA
CGGCGGTGACCCGTGCCAAGCGCCTTGTGGTGCTGGTCGGCTCGCGCCGCGCGCTGGGGCAGGCGGTGCGCACCGTCTCG
GCGGGGAGGCGCTGTACCGCGCTGGATCACCGACTCGGCGGCGATGTGACAGTCGAGCGTGTCAAGAGGGTTTCCGAACG
ATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(94-143)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

AAA domain (AAA_30)

(336-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.202

100

0.361

Multiple sequence alignment