Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BKN48_RS07095 Genome accession   NZ_CP017676
Coordinates   1326103..1326792 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain VV2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321103..1331792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS07060 (BKN48_07060) flgN 1321283..1321765 (-) 483 WP_014481048.1 flagellar protein FlgN -
  BKN48_RS07065 (BKN48_07065) flgM 1321781..1322047 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  BKN48_RS07070 (BKN48_07070) yvyF 1322128..1322547 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BKN48_RS07075 (BKN48_07075) comFC 1322621..1323343 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  BKN48_RS07080 (BKN48_07080) comFB 1323307..1323603 (-) 297 WP_003227989.1 late competence protein ComFB -
  BKN48_RS07085 (BKN48_07085) comFA 1323663..1325054 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  BKN48_RS07090 (BKN48_07090) fakBA 1325160..1326005 (-) 846 WP_070547862.1 DegV family protein -
  BKN48_RS07095 (BKN48_07095) degU 1326103..1326792 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BKN48_RS07100 (BKN48_07100) degS 1326875..1328032 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BKN48_RS07105 (BKN48_07105) yvyE 1328249..1328902 (+) 654 WP_003227979.1 YigZ family protein -
  BKN48_RS07110 (BKN48_07110) tagV 1328902..1330077 (+) 1176 WP_070547864.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  BKN48_RS07115 (BKN48_07115) tagO 1330150..1331226 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=201489 BKN48_RS07095 WP_003219701.1 1326103..1326792(-) (degU) [Bacillus subtilis strain VV2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=201489 BKN48_RS07095 WP_003219701.1 1326103..1326792(-) (degU) [Bacillus subtilis strain VV2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment