Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BKN48_RS07085 Genome accession   NZ_CP017676
Coordinates   1323663..1325054 (-) Length   463 a.a.
NCBI ID   WP_070547860.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318663..1330054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS07050 (BKN48_07050) flgL 1318834..1319730 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  BKN48_RS07055 (BKN48_07055) flgK 1319741..1321264 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  BKN48_RS07060 (BKN48_07060) flgN 1321283..1321765 (-) 483 WP_014481048.1 flagellar protein FlgN -
  BKN48_RS07065 (BKN48_07065) flgM 1321781..1322047 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  BKN48_RS07070 (BKN48_07070) yvyF 1322128..1322547 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BKN48_RS07075 (BKN48_07075) comFC 1322621..1323343 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  BKN48_RS07080 (BKN48_07080) comFB 1323307..1323603 (-) 297 WP_003227989.1 late competence protein ComFB -
  BKN48_RS07085 (BKN48_07085) comFA 1323663..1325054 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  BKN48_RS07090 (BKN48_07090) fakBA 1325160..1326005 (-) 846 WP_070547862.1 DegV family protein -
  BKN48_RS07095 (BKN48_07095) degU 1326103..1326792 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BKN48_RS07100 (BKN48_07100) degS 1326875..1328032 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BKN48_RS07105 (BKN48_07105) yvyE 1328249..1328902 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52557.52 Da        Isoelectric Point: 9.7976

>NTDB_id=201488 BKN48_RS07085 WP_070547860.1 1323663..1325054(-) (comFA) [Bacillus subtilis strain VV2]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGAEISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=201488 BKN48_RS07085 WP_070547860.1 1323663..1325054(-) (comFA) [Bacillus subtilis strain VV2]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGAAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTCTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGAAATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAGTTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.84

100

0.978

Multiple sequence alignment