Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BKN48_RS05180 Genome accession   NZ_CP017676
Coordinates   941692..942336 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 936692..947336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS05145 (BKN48_05145) mrpB 937884..938315 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  BKN48_RS05150 (BKN48_05150) mrpC 938315..938656 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  BKN48_RS05155 (BKN48_05155) mrpD 938649..940130 (+) 1482 WP_003228817.1 Na+/H+ antiporter subunit D -
  BKN48_RS05160 (BKN48_05160) mrpE 940136..940612 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  BKN48_RS05165 (BKN48_05165) mrpF 940612..940896 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  BKN48_RS05170 (BKN48_05170) mnhG 940880..941254 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  BKN48_RS05175 (BKN48_05175) yuxO 941293..941673 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  BKN48_RS05180 (BKN48_05180) comA 941692..942336 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  BKN48_RS05185 (BKN48_05185) comP 942417..944723 (-) 2307 WP_070547703.1 two-component system sensor histidine kinase ComP Regulator
  BKN48_RS05190 (BKN48_05190) comX 944740..944913 (-) 174 WP_021480497.1 competence pheromone ComX -
  BKN48_RS05195 (BKN48_05195) comQ 944929..945795 (-) 867 WP_021480498.1 polyprenyl synthetase family protein Regulator
  BKN48_RS05200 (BKN48_05200) degQ 945980..946120 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  BKN48_RS21455 - 946342..946404 (+) 63 Protein_1014 hypothetical protein -
  BKN48_RS05205 (BKN48_05205) - 946582..946950 (+) 369 WP_038828672.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=201481 BKN48_RS05180 WP_003220716.1 941692..942336(-) (comA) [Bacillus subtilis strain VV2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=201481 BKN48_RS05180 WP_003220716.1 941692..942336(-) (comA) [Bacillus subtilis strain VV2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATATTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment