Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SSU05_0496 Genome accession   CP000407
Coordinates   483071..483805 (+) Length   244 a.a.
NCBI ID   ABP89462.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 478071..488805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0490 - 478572..478880 (-) 309 ABP89456.1 conserved hypothetical protein -
  SSU05_0491 - 478935..479402 (-) 468 ABP89457.1 putative hydrolase (MutT family) -
  SSU05_0492 clpE 479582..481810 (-) 2229 ABP89458.1 ATPases with chaperone activity, ATP-binding subunit Regulator
  SSU05_0493 - 482034..482264 (+) 231 ABP89459.1 Uncharacterized protein conserved in bacteria -
  SSU05_0494 - 482390..482872 (+) 483 ABP89460.1 ABC-type amino acid transport system, permease component -
  SSU05_0495 - 482806..483078 (+) 273 ABP89461.1 ABC-type amino acid transport system, permease component -
  SSU05_0496 amiE 483071..483805 (+) 735 ABP89462.1 putative amino acid ABC transporter, ATP-binding protein Regulator
  SSU05_0497 - 483935..484783 (+) 849 ABP89463.1 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase -
  SSU05_0498 - 486232..486525 (+) 294 ABP89464.1 Uncharacterized protein conserved in bacteria -
  SSU05_0499 - 486509..487117 (+) 609 ABP89465.1 putative signal peptidase IB -
  SSU05_0500 - 487136..487522 (+) 387 ABP89466.1 hypothetical protein -
  SSU05_0502 - 487523..487900 (-) 378 ABP89467.1 hypothetical protein -
  SSU05_0501 - 487868..488707 (+) 840 ABP89468.1 sortase-like protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=20146 SSU05_0496 ABP89462.1 483071..483805(+) (amiE) [Streptococcus suis 05ZYH33]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=20146 SSU05_0496 ABP89462.1 483071..483805(+) (amiE) [Streptococcus suis 05ZYH33]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAACATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CAAATGCCTATCCACAAAGTCTTTCAGGTGGTCAGCAACAACGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365

Multiple sequence alignment