Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BKN48_RS01560 Genome accession   NZ_CP017676
Coordinates   263547..265277 (-) Length   576 a.a.
NCBI ID   WP_070547522.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 258547..270277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS01525 (BKN48_01525) - 258601..258897 (-) 297 WP_014480225.1 hypothetical protein -
  BKN48_RS21005 (BKN48_01530) - 259205..259357 (+) 153 WP_122060483.1 hypothetical protein -
  BKN48_RS01535 (BKN48_01535) yqiG 259430..260548 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  BKN48_RS01545 (BKN48_01545) spo0A 261013..261816 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  BKN48_RS01555 (BKN48_01555) spoIVB 262092..263372 (-) 1281 WP_070547521.1 SpoIVB peptidase -
  BKN48_RS01560 (BKN48_01560) recN 263547..265277 (-) 1731 WP_070547522.1 DNA repair protein RecN Machinery gene
  BKN48_RS01565 (BKN48_01565) argR 265314..265763 (-) 450 WP_014114358.1 arginine repressor ArgR -
  BKN48_RS01570 (BKN48_01570) yqxC 265861..266706 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  BKN48_RS01575 (BKN48_01575) dxs 266703..268604 (-) 1902 WP_070547523.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BKN48_RS01580 (BKN48_01580) ispA 268779..269669 (-) 891 WP_003230262.1 polyprenyl synthetase family protein -
  BKN48_RS01585 (BKN48_01585) xseB 269659..269913 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64637.47 Da        Isoelectric Point: 4.7737

>NTDB_id=201458 BKN48_RS01560 WP_070547522.1 263547..265277(-) (recN) [Bacillus subtilis strain VV2]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLDVC
AEQGIDVSDEMIVMRRDISTTGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKRKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=201458 BKN48_RS01560 WP_070547522.1 263547..265277(-) (recN) [Bacillus subtilis strain VV2]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGATGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGACCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGATGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCGTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTAGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCTGCGCAGCTTGAAGATATCTCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACACGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTCGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAGTTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTCTCCTCACAACAGGATGTGACATCGATCATTTTTGACGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.132

100

0.991

Multiple sequence alignment